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Comment: Comment: Viral genes not showing up in combined mouse+virus alignment
23 months ago by cook.675 ▴ 250
0
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3
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1.1k
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Viral genes not showing up in combined mouse+virus alignment
RNAseq
23 months ago by cook.675 ▴ 250
0
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1
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1.1k
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Comment: Comment: Viral genes not showing up in combined mouse+virus alignment
23 months ago by cook.675 ▴ 250
0
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0
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1.9k
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Comment: Comment: featureCount Error "No paired-end reads were detected in paired-end read library
24 months ago by cook.675 ▴ 250
0
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2
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1.9k
views
featureCount Error "No paired-end reads were detected in paired-end read library"
Subread RNAseq featureCount
updated 24 months ago by 13k • written 24 months ago by ▴ 250
1
vote
4
replies
1.5k
views
RNAseq how to map Mouse+Virus Genome with STAR
STAR GTF RNA-seq fasta
updated 24 months ago by 154k • written 24 months ago by ▴ 250
0
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1
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1.5k
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Comment: Comment: RNAseq how to map Mouse+Virus Genome with STAR
updated 24 months ago by 154k • written 24 months ago by ▴ 250
0
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2
replies
849
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How to bin groups of 20 cells based amount of a metadata value
data seurat scRNA-seq R
updated 3.6 years ago by 154k • written 3.6 years ago by ▴ 250
0
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1
reply
849
views
Answer: Answer: How to bin groups of 20 cells based amount of a metadata value
3.6 years ago by cook.675 ▴ 250
0
votes
1
reply
845
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How to label metadata of Seurat object based gene read count
seurat scRNA-seq
updated 3.6 years ago by 13k • written 3.6 years ago by ▴ 250
15
votes
12
replies
35k
views
10 follow
Pull number of cells in cluster from seurat object
RNA-Seq seurat
updated 3.7 years ago by 154k • written 6.1 years ago by ▴ 250
4
votes
6
replies
14k
views
Looking for differential gene expression between treatment, within a specific cluster (seurat)
seurat
updated 17 months ago by ★ 19k • written 6.1 years ago by ▴ 250
0
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2
replies
967
views
RNAseq Per tile sequence quality question
RNAseq fastqc
4.5 years ago by cook.675 ▴ 250
0
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0
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967
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Comment: Comment: RNAseq Per tile sequence quality question
4.5 years ago by cook.675 ▴ 250
7
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3
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13k
views
appending information to seurat object meta.data
scRNA seurat
updated 4.3 years ago by ▴ 330 • written 6.0 years ago by ▴ 250
4
votes
3
replies
11k
views
How to remove entire rows from seurat object based on cellhash read
seurat
updated 5.5 years ago by • 0 • written 6.1 years ago by ▴ 250
1
vote
1
reply
2.2k
views
Calling gene names from a list within Seurat subset function
seurat RNA-Seq
updated 2.6 years ago by • 0 • written 5.6 years ago by ▴ 250
1
vote
1
reply
1.1k
views
Summing data from 3 different parts of an R object at once
R seurat scRNA seq
updated 5.9 years ago by 20 • written 6.1 years ago by ▴ 250
0
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0
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1.8k
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Comment: C: How to extract a specific gene sequence for a specific cell from scRNA-seq fastq
5.9 years ago by cook.675 ▴ 250
0
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2
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1.8k
views
How to extract a specific gene sequence for a specific cell from scRNA-seq fastq file
scRNA-seq sequencing
updated 5.9 years ago by • 0 • written 5.9 years ago by ▴ 250
0
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1
reply
25k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
5.9 years ago by cook.675 ▴ 250
0
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6
replies
2.8k
views
Examination of data matrix from CITE-seq-counts
RNA-Seq seurat
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 250
0
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1
reply
25k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
6.0 years ago by cook.675 ▴ 250
0
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0
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7.9k
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Comment: C: How to combine seperate seurat meta.data ID;s into one column?
6.0 years ago by cook.675 ▴ 250
0
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2
replies
7.9k
views
How to combine seperate seurat meta.data ID;s into one column?
seurat scRNA
updated 6.0 years ago by 45k • written 6.0 years ago by ▴ 250
5
votes
10
replies
25k
views
subsetting out cells from seurat object based on expression of 1 gene
seurat R
updated 4.2 years ago by ▴ 100 • written 6.0 years ago by ▴ 250
6
votes
3
replies
4.8k
views
A brief question regarding regressing out cell cycle effects or ribosomal/mitochondrial genes
seuart scRNA seq
updated 6.0 years ago by ★ 19k • written 6.0 years ago by ▴ 250
0
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1
reply
1.6k
views
Comment: C: DEG data per-cell
6.0 years ago by cook.675 ▴ 250
0
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1
reply
1.6k
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Comment: C: DEG data per-cell
6.0 years ago by cook.675 ▴ 250
0
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5
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1.6k
views
DEG data per-cell
RNA-Seq
6.0 years ago by cook.675 ▴ 250
0
votes
0
replies
25k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
6.0 years ago by cook.675 ▴ 250
0
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1
reply
25k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
6.0 years ago by cook.675 ▴ 250
0
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0
replies
1.6k
views
Interpreting DEG heatmap between treatment groups
heatmap scRNASEQ
6.0 years ago by cook.675 ▴ 250
0
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0
replies
1.6k
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Comment: C: QC filtering by Count depth
6.0 years ago by cook.675 ▴ 250
0
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0
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2.8k
views
Answer: C: How to concurrently filter RNA and CITEseq data within seurat object
6.1 years ago by cook.675 ▴ 250
1
vote
1
reply
2.8k
views
How to concurrently filter RNA and CITEseq data within seurat object
scRNA seurat
6.1 years ago by cook.675 ▴ 250
0
votes
1
reply
1.6k
views
QC filtering by Count depth
scRNAseq
6.1 years ago by cook.675 ▴ 250
0
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0
replies
2.8k
views
Comment: C: PCA plot interpretation from scRNA data set
6.1 years ago by cook.675 ▴ 250
0
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1
reply
2.8k
views
Comment: C: PCA plot interpretation from scRNA data set
6.1 years ago by cook.675 ▴ 250
0
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6
replies
2.8k
views
PCA plot interpretation from scRNA data set
PCA scRNA seq seurat
6.1 years ago by cook.675 ▴ 250
0
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0
replies
1.1k
views
Answer: C: Summing data from 3 different parts of an R object at once
6.1 years ago by cook.675 ▴ 250
0
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0
replies
2.4k
views
Comment: C: subsetting matrix elements and creating a histogram
6.1 years ago by cook.675 ▴ 250
0
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1
reply
2.4k
views
Comment: C: subsetting matrix elements and creating a histogram
6.1 years ago by cook.675 ▴ 250
0
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1
reply
2.4k
views
Comment: C: subsetting matrix elements and creating a histogram
6.1 years ago by cook.675 ▴ 250
0
votes
1
reply
2.4k
views
Comment: C: subsetting matrix elements and creating a histogram
6.1 years ago by cook.675 ▴ 250
0
votes
6
replies
2.4k
views
subsetting matrix elements and creating a histogram
RNA-Seq
updated 6.1 years ago by 45k • written 6.1 years ago by ▴ 250
0
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0
replies
2.8k
views
Comment: C: Examination of data matrix from CITE-seq-counts
6.1 years ago by cook.675 ▴ 250
0
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1
reply
2.8k
views
Comment: C: Examination of data matrix from CITE-seq-counts
6.1 years ago by cook.675 ▴ 250
0
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1
reply
2.8k
views
Comment: C: Examination of data matrix from CITE-seq-counts
6.1 years ago by cook.675 ▴ 250
0
votes
0
replies
2.8k
views
Comment: C: Examination of data matrix from CITE-seq-counts
6.1 years ago by cook.675 ▴ 250
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