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Comment: Comment: Viral genes not showing up in combined mouse+virus alignment
5 months ago by cook.675 ▴ 220
0
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3
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469
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Viral genes not showing up in combined mouse+virus alignment
RNAseq
5 months ago by cook.675 ▴ 220
0
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1
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469
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Comment: Comment: Viral genes not showing up in combined mouse+virus alignment
5 months ago by cook.675 ▴ 220
0
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0
replies
595
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Comment: Comment: featureCount Error "No paired-end reads were detected in paired-end read library
5 months ago by cook.675 ▴ 220
0
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2
replies
595
views
featureCount Error "No paired-end reads were detected in paired-end read library"
Subread RNAseq featureCount
updated 5 months ago by 13k • written 5 months ago by ▴ 220
1
vote
4
replies
754
views
RNAseq how to map Mouse+Virus Genome with STAR
STAR GTF RNA-seq fasta
updated 5 months ago by 142k • written 5 months ago by ▴ 220
0
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1
reply
754
views
Comment: Comment: RNAseq how to map Mouse+Virus Genome with STAR
updated 5 months ago by 142k • written 5 months ago by ▴ 220
0
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2
replies
480
views
How to bin groups of 20 cells based amount of a metadata value
data seurat scRNA-seq R
updated 2.1 years ago by 142k • written 2.1 years ago by ▴ 220
0
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1
reply
480
views
Answer: Answer: How to bin groups of 20 cells based amount of a metadata value
2.1 years ago by cook.675 ▴ 220
0
votes
1
reply
515
views
How to label metadata of Seurat object based gene read count
seurat scRNA-seq
updated 2.1 years ago by 13k • written 2.1 years ago by ▴ 220
13
votes
12
replies
27k
views
10 follow
Pull number of cells in cluster from seurat object
RNA-Seq seurat
updated 2.2 years ago by 142k • written 4.6 years ago by ▴ 220
2
votes
6
replies
12k
views
Looking for differential gene expression between treatment, within a specific cluster (seurat)
seurat
updated 2.9 years ago by ▴ 40 • written 4.6 years ago by ▴ 220
0
votes
2
replies
660
views
RNAseq Per tile sequence quality question
RNAseq fastqc
3.0 years ago by cook.675 ▴ 220
0
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0
replies
660
views
Comment: Comment: RNAseq Per tile sequence quality question
3.0 years ago by cook.675 ▴ 220
7
votes
3
replies
11k
views
appending information to seurat object meta.data
scRNA seurat
updated 2.7 years ago by ▴ 310 • written 4.4 years ago by ▴ 220
4
votes
3
replies
9.3k
views
How to remove entire rows from seurat object based on cellhash read
seurat
updated 4.0 years ago by • 0 • written 4.6 years ago by ▴ 220
1
vote
1
reply
1.7k
views
Calling gene names from a list within Seurat subset function
seurat RNA-Seq
updated 13 months ago by • 0 • written 4.1 years ago by ▴ 220
1
vote
1
reply
735
views
Summing data from 3 different parts of an R object at once
R seurat scRNA seq
updated 4.4 years ago by 20 • written 4.5 years ago by ▴ 220
0
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0
replies
1.3k
views
Comment: C: How to extract a specific gene sequence for a specific cell from scRNA-seq fastq
4.4 years ago by cook.675 ▴ 220
0
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2
replies
1.3k
views
How to extract a specific gene sequence for a specific cell from scRNA-seq fastq file
scRNA-seq sequencing
updated 4.4 years ago by • 0 • written 4.4 years ago by ▴ 220
0
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1
reply
21k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
4.4 years ago by cook.675 ▴ 220
0
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6
replies
2.0k
views
Examination of data matrix from CITE-seq-counts
RNA-Seq seurat
updated 4.4 years ago by 20 • written 4.6 years ago by ▴ 220
0
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1
reply
21k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
4.4 years ago by cook.675 ▴ 220
0
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0
replies
5.9k
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Comment: C: How to combine seperate seurat meta.data ID;s into one column?
4.4 years ago by cook.675 ▴ 220
0
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2
replies
5.9k
views
How to combine seperate seurat meta.data ID;s into one column?
seurat scRNA
updated 4.4 years ago by 43k • written 4.4 years ago by ▴ 220
5
votes
10
replies
21k
views
subsetting out cells from seurat object based on expression of 1 gene
seurat R
updated 2.6 years ago by ▴ 100 • written 4.5 years ago by ▴ 220
6
votes
3
replies
3.6k
views
A brief question regarding regressing out cell cycle effects or ribosomal/mitochondrial genes
seuart scRNA seq
updated 4.5 years ago by ★ 16k • written 4.5 years ago by ▴ 220
0
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1
reply
1.1k
views
Comment: C: DEG data per-cell
4.5 years ago by cook.675 ▴ 220
0
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1
reply
1.1k
views
Comment: C: DEG data per-cell
4.5 years ago by cook.675 ▴ 220
0
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5
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1.1k
views
DEG data per-cell
RNA-Seq
4.5 years ago by cook.675 ▴ 220
0
votes
0
replies
21k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
4.5 years ago by cook.675 ▴ 220
0
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1
reply
21k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
4.5 years ago by cook.675 ▴ 220
0
votes
0
replies
1.4k
views
Interpreting DEG heatmap between treatment groups
heatmap scRNASEQ
4.5 years ago by cook.675 ▴ 220
0
votes
0
replies
1.3k
views
Comment: C: QC filtering by Count depth
4.5 years ago by cook.675 ▴ 220
0
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0
replies
2.2k
views
Answer: C: How to concurrently filter RNA and CITEseq data within seurat object
4.5 years ago by cook.675 ▴ 220
0
votes
1
reply
2.2k
views
How to concurrently filter RNA and CITEseq data within seurat object
scRNA seurat
4.5 years ago by cook.675 ▴ 220
0
votes
1
reply
1.3k
views
QC filtering by Count depth
scRNAseq
4.5 years ago by cook.675 ▴ 220
0
votes
0
replies
2.0k
views
Comment: C: PCA plot interpretation from scRNA data set
4.5 years ago by cook.675 ▴ 220
0
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1
reply
2.0k
views
Comment: C: PCA plot interpretation from scRNA data set
4.5 years ago by cook.675 ▴ 220
0
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6
replies
2.0k
views
PCA plot interpretation from scRNA data set
PCA scRNA seq seurat
4.5 years ago by cook.675 ▴ 220
0
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0
replies
735
views
Answer: C: Summing data from 3 different parts of an R object at once
4.5 years ago by cook.675 ▴ 220
0
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0
replies
1.6k
views
Comment: C: subsetting matrix elements and creating a histogram
4.5 years ago by cook.675 ▴ 220
0
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1
reply
1.6k
views
Comment: C: subsetting matrix elements and creating a histogram
4.6 years ago by cook.675 ▴ 220
0
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1
reply
1.6k
views
Comment: C: subsetting matrix elements and creating a histogram
4.6 years ago by cook.675 ▴ 220
0
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1
reply
1.6k
views
Comment: C: subsetting matrix elements and creating a histogram
4.6 years ago by cook.675 ▴ 220
0
votes
6
replies
1.6k
views
subsetting matrix elements and creating a histogram
RNA-Seq
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 220
0
votes
0
replies
2.0k
views
Comment: C: Examination of data matrix from CITE-seq-counts
4.6 years ago by cook.675 ▴ 220
0
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1
reply
2.0k
views
Comment: C: Examination of data matrix from CITE-seq-counts
4.6 years ago by cook.675 ▴ 220
0
votes
1
reply
2.0k
views
Comment: C: Examination of data matrix from CITE-seq-counts
4.6 years ago by cook.675 ▴ 220
0
votes
0
replies
2.0k
views
Comment: C: Examination of data matrix from CITE-seq-counts
4.6 years ago by cook.675 ▴ 220
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