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Comment: C: Reference Guided De Novo assembly of Contigs generated from Illumina PE Reads
4.9 years ago by robert.murphy ▴ 110
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1
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2.9k
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Comment: C: Do you NEED to bin a metagenome into MAGs?
4.9 years ago by robert.murphy ▴ 110
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5
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2.9k
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Do you NEED to bin a metagenome into MAGs?
Assembly binning
updated 4.9 years ago by 3.4k • written 4.9 years ago by ▴ 110
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0
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6.2k
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Comment: C: Prokka Annotation or NCBI Annotation
4.9 years ago by robert.murphy ▴ 110
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0
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818
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co-assembly bam file generation for metagenomic binning
Assembly binning
4.9 years ago by robert.murphy ▴ 110
0
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0
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2.2k
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Comment: C: Blastn on illumina reads for contamination detection before or after quality fil
5.0 years ago by robert.murphy ▴ 110
0
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1
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2.2k
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Comment: C: Blastn on illumina reads for contamination detection before or after quality fil
5.0 years ago by robert.murphy ▴ 110
0
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1
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2.2k
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Comment: C: Blastn on illumina reads for contamination detection before or after quality fil
5.0 years ago by robert.murphy ▴ 110
0
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1
reply
2.2k
views
Comment: C: Blastn on illumina reads for contamination detection before or after quality fil
5.0 years ago by robert.murphy ▴ 110
0
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1
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1.3k
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Comment: C: To merge or not to merge during de novo assembly?
updated 5.0 years ago by 16k • written 5.0 years ago by ▴ 110
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1
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1.3k
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Comment: C: To merge or not to merge during de novo assembly?
5.0 years ago by robert.murphy ▴ 110
0
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1
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1.3k
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Comment: C: To merge or not to merge during de novo assembly?
5.0 years ago by robert.murphy ▴ 110
2
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7
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1.3k
views
To merge or not to merge during de novo assembly?
Assembly
5.0 years ago by robert.murphy ▴ 110
0
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0
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7.4k
views
Comment: C: BWA mem skip orientation RF/RR as there are not enough pairs
5.0 years ago by robert.murphy ▴ 110
1
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1
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7.4k
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Comment: C: BWA mem skip orientation RF/RR as there are not enough pairs
5.0 years ago by robert.murphy ▴ 110
0
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1
reply
7.4k
views
Comment: C: BWA mem skip orientation RF/RR as there are not enough pairs
5.0 years ago by robert.murphy ▴ 110
7
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7
replies
7.4k
views
BWA mem skip orientation RF/RR as there are not enough pairs
alignment
updated 5.0 years ago by 35k • written 5.0 years ago by ▴ 110
0
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0
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3.2k
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Comment: C: How best to pick kmer's for spades assembly?
5.0 years ago by robert.murphy ▴ 110
0
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1
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3.2k
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Comment: C: How best to pick kmer's for spades assembly?
5.0 years ago by robert.murphy ▴ 110
0
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4
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3.2k
views
How best to pick kmer's for spades assembly?
Assembly
5.0 years ago by robert.murphy ▴ 110
0
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0
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1.1k
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Comment: C: Samtools stats -F showing filtering from when and under what parameters?
5.0 years ago by robert.murphy ▴ 110
0
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1
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1.1k
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Comment: C: Samtools stats -F showing filtering from when and under what parameters?
5.0 years ago by robert.murphy ▴ 110
2
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4
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1.1k
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Samtools stats -F showing filtering from when and under what parameters?
alignment
5.0 years ago by robert.murphy ▴ 110
0
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0
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6.3k
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Comment: C: Why not merging?
5.0 years ago by robert.murphy ▴ 110
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0
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3.2k
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Comment: C: Quallity trimming by phred score, how far is to far?
5.0 years ago by robert.murphy ▴ 110
0
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0
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3.2k
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Comment: C: Quallity trimming by phred score, how far is to far?
5.0 years ago by robert.murphy ▴ 110
0
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1
reply
3.2k
views
Comment: C: Quallity trimming by phred score, how far is to far?
5.0 years ago by robert.murphy ▴ 110
0
votes
1
reply
3.2k
views
Comment: C: Quallity trimming by phred score, how far is to far?
5.0 years ago by robert.murphy ▴ 110
2
votes
7
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3.2k
views
Quallity trimming by phred score, how far is to far?
Assembly sequencing
updated 5.0 years ago by 154k • written 5.0 years ago by ▴ 110
0
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0
replies
775
views
Culture independent detection of bacterial biosynthetic gene clusters from microbiomes
genome metagenome BGC biosynthetic gene cluster
5.1 years ago by robert.murphy ▴ 110
1
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2
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1.6k
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Normalization of raw Illumina reads.
sequencing Assembly
updated 5.1 years ago by 45k • written 5.1 years ago by ▴ 110
0
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1
reply
3.7k
views
Comment: C: SPAdes v3.14 unable to find files despite correct file path
5.1 years ago by robert.murphy ▴ 110
0
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5
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1.8k
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Is it possible to supplement a gbk file with manual annotations?
annotation genome viral
updated 5.1 years ago by ★ 30k • written 5.1 years ago by ▴ 110
0
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0
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1.8k
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Comment: C: Is it possible to supplement a gbk file with manual annotations?
5.1 years ago by robert.murphy ▴ 110
0
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1
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1.8k
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Comment: C: Is it possible to supplement a gbk file with manuall annottions?
5.1 years ago by robert.murphy ▴ 110
0
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0
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3.7k
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Comment: C: SPAdes v3.14 unable to find files despite correct file path
5.1 years ago by robert.murphy ▴ 110
0
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3
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3.7k
views
Comment: C: SPAdes v3.14 unable to find files despite correct file path
5.1 years ago by robert.murphy ▴ 110
0
votes
0
replies
3.7k
views
Comment: C: SPAdes v3.14 unable to find files despite correct file path
5.1 years ago by robert.murphy ▴ 110
0
votes
0
replies
3.7k
views
Comment: C: SPAdes v3.14 unable to find files despite correct file path
5.1 years ago by robert.murphy ▴ 110
1
vote
13
replies
3.7k
views
SPAdes v3.14 unable to find files despite correct file path
Assembly
updated 4.4 years ago by ▴ 50 • written 5.1 years ago by ▴ 110
0
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0
replies
628
views
Are there methods to identify a bacteria as anaerobic or aerobic through its whole genome?
genome
updated 5.1 years ago by 20 • written 5.3 years ago by ▴ 110
0
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0
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884
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Lastal aligner not detecting queery sequences
alignment
5.1 years ago by robert.murphy ▴ 110
0
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1
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5.2k
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Comment: C: Bowtie2 and BWA-MEM giving very different results in metagenomic data
5.2 years ago by robert.murphy ▴ 110
0
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0
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986
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Use of BAMs mapped to assembly of all reads in metagenome binning.
binning genome metagenome
5.2 years ago by robert.murphy ▴ 110
0
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0
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1.7k
views
Comment: C: Is there a tool for creating publication quallity phylogenetic tree with metadat
5.3 years ago by robert.murphy ▴ 110
0
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0
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1.7k
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Comment: C: Is there a tool for creating publication quallity phylogenetic tree with metadat
5.3 years ago by robert.murphy ▴ 110
0
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2
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1.7k
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Comment: C: Is there a tool for creating publication quallity phylogenetic tree with metadat
5.3 years ago by robert.murphy ▴ 110
1
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7
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1.7k
views
Is there a tool for creating publication quallity phylogenetic tree with metadata associated with each leaf
alignment
updated 5.3 years ago by 3.4k • written 5.3 years ago by ▴ 110
4
votes
4
replies
3.3k
views
Scanpy vs DeSeq for single cell RNASeq DE gene analysis
RNA-Seq
updated 4.0 years ago by ▴ 10 • written 5.7 years ago by ▴ 110
0
votes
0
replies
847
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Comment: C: Comparing two sets of 16s sequences to identify any identicle (within 97%) seque
5.6 years ago by robert.murphy ▴ 110
181 results • Page 3 of 4
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