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Comment: C: Reference Guided De Novo assembly of Contigs generated from Illumina PE Reads
3.4 years ago by robert.murphy ▴ 80
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1.8k
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Comment: C: Do you NEED to bin a metagenome into MAGs?
3.4 years ago by robert.murphy ▴ 80
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1.8k
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Do you NEED to bin a metagenome into MAGs?
Assembly binning
updated 3.4 years ago by 3.2k • written 3.4 years ago by ▴ 80
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4.3k
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Comment: C: Prokka Annotation or NCBI Annotation
3.4 years ago by robert.murphy ▴ 80
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583
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co-assembly bam file generation for metagenomic binning
Assembly binning
3.4 years ago by robert.murphy ▴ 80
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1.4k
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Comment: C: Blastn on illumina reads for contamination detection before or after quality fil
3.5 years ago by robert.murphy ▴ 80
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1
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1.4k
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Comment: C: Blastn on illumina reads for contamination detection before or after quality fil
3.5 years ago by robert.murphy ▴ 80
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1
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1.4k
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Comment: C: Blastn on illumina reads for contamination detection before or after quality fil
3.5 years ago by robert.murphy ▴ 80
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1
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1.4k
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Comment: C: Blastn on illumina reads for contamination detection before or after quality fil
3.5 years ago by robert.murphy ▴ 80
0
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1
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793
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Comment: C: To merge or not to merge during de novo assembly?
updated 3.5 years ago by 15k • written 3.5 years ago by ▴ 80
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1
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793
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Comment: C: To merge or not to merge during de novo assembly?
3.5 years ago by robert.murphy ▴ 80
0
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1
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793
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Comment: C: To merge or not to merge during de novo assembly?
3.5 years ago by robert.murphy ▴ 80
2
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7
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793
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To merge or not to merge during de novo assembly?
Assembly
3.5 years ago by robert.murphy ▴ 80
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0
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4.7k
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Comment: C: BWA mem skip orientation RF/RR as there are not enough pairs
3.5 years ago by robert.murphy ▴ 80
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1
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4.7k
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Comment: C: BWA mem skip orientation RF/RR as there are not enough pairs
3.5 years ago by robert.murphy ▴ 80
0
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1
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4.7k
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Comment: C: BWA mem skip orientation RF/RR as there are not enough pairs
3.5 years ago by robert.murphy ▴ 80
3
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7
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4.7k
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BWA mem skip orientation RF/RR as there are not enough pairs
alignment
updated 3.5 years ago by 35k • written 3.5 years ago by ▴ 80
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0
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2.5k
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Comment: C: How best to pick kmer's for spades assembly?
3.5 years ago by robert.murphy ▴ 80
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1
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2.5k
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Comment: C: How best to pick kmer's for spades assembly?
3.5 years ago by robert.murphy ▴ 80
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4
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2.5k
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How best to pick kmer's for spades assembly?
Assembly
3.5 years ago by robert.murphy ▴ 80
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0
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789
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Comment: C: Samtools stats -F showing filtering from when and under what parameters?
3.5 years ago by robert.murphy ▴ 80
0
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1
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789
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Comment: C: Samtools stats -F showing filtering from when and under what parameters?
3.5 years ago by robert.murphy ▴ 80
2
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4
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789
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Samtools stats -F showing filtering from when and under what parameters?
alignment
3.5 years ago by robert.murphy ▴ 80
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0
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4.4k
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Comment: C: Why not merging?
3.5 years ago by robert.murphy ▴ 80
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0
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1.5k
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Comment: C: Quallity trimming by phred score, how far is to far?
3.5 years ago by robert.murphy ▴ 80
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0
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1.5k
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Comment: C: Quallity trimming by phred score, how far is to far?
3.5 years ago by robert.murphy ▴ 80
0
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1
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1.5k
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Comment: C: Quallity trimming by phred score, how far is to far?
3.5 years ago by robert.murphy ▴ 80
0
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1
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1.5k
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Comment: C: Quallity trimming by phred score, how far is to far?
3.5 years ago by robert.murphy ▴ 80
2
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7
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1.5k
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Quallity trimming by phred score, how far is to far?
Assembly sequencing
updated 3.5 years ago by 142k • written 3.5 years ago by ▴ 80
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0
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601
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Culture independent detection of bacterial biosynthetic gene clusters from microbiomes
genome metagenome BGC biosynthetic gene cluster
3.6 years ago by robert.murphy ▴ 80
1
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2
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1.2k
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Normalization of raw Illumina reads.
sequencing Assembly
updated 3.6 years ago by 43k • written 3.6 years ago by ▴ 80
0
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1
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2.2k
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Comment: C: SPAdes v3.14 unable to find files despite correct file path
3.6 years ago by robert.murphy ▴ 80
0
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5
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1.2k
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Is it possible to supplement a gbk file with manual annotations?
annotation genome viral
updated 3.6 years ago by ★ 27k • written 3.6 years ago by ▴ 80
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0
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1.2k
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Comment: C: Is it possible to supplement a gbk file with manual annotations?
3.6 years ago by robert.murphy ▴ 80
0
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1
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1.2k
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Comment: C: Is it possible to supplement a gbk file with manuall annottions?
3.6 years ago by robert.murphy ▴ 80
0
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0
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2.2k
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Comment: C: SPAdes v3.14 unable to find files despite correct file path
3.6 years ago by robert.murphy ▴ 80
0
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3
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2.2k
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Comment: C: SPAdes v3.14 unable to find files despite correct file path
3.6 years ago by robert.murphy ▴ 80
0
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0
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2.2k
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Comment: C: SPAdes v3.14 unable to find files despite correct file path
3.6 years ago by robert.murphy ▴ 80
0
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0
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2.2k
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Comment: C: SPAdes v3.14 unable to find files despite correct file path
3.6 years ago by robert.murphy ▴ 80
1
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13
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2.2k
views
SPAdes v3.14 unable to find files despite correct file path
Assembly
updated 2.9 years ago by ▴ 50 • written 3.6 years ago by ▴ 80
0
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0
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461
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Are there methods to identify a bacteria as anaerobic or aerobic through its whole genome?
genome
updated 3.6 years ago by 20 • written 3.8 years ago by ▴ 80
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0
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697
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Lastal aligner not detecting queery sequences
alignment
3.6 years ago by robert.murphy ▴ 80
0
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1
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3.7k
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Comment: C: Bowtie2 and BWA-MEM giving very different results in metagenomic data
3.7 years ago by robert.murphy ▴ 80
0
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0
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776
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Use of BAMs mapped to assembly of all reads in metagenome binning.
binning genome metagenome
3.7 years ago by robert.murphy ▴ 80
0
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0
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1.1k
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Comment: C: Is there a tool for creating publication quallity phylogenetic tree with metadat
3.8 years ago by robert.murphy ▴ 80
0
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0
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1.1k
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Comment: C: Is there a tool for creating publication quallity phylogenetic tree with metadat
3.8 years ago by robert.murphy ▴ 80
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2
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1.1k
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Comment: C: Is there a tool for creating publication quallity phylogenetic tree with metadat
3.8 years ago by robert.murphy ▴ 80
1
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7
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1.1k
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Is there a tool for creating publication quallity phylogenetic tree with metadata associated with each leaf
alignment
updated 3.8 years ago by 3.2k • written 3.8 years ago by ▴ 80
4
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4
replies
2.5k
views
Scanpy vs DeSeq for single cell RNASeq DE gene analysis
RNA-Seq
updated 2.5 years ago by ▴ 10 • written 4.2 years ago by ▴ 80
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0
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563
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Comment: C: Comparing two sets of 16s sequences to identify any identicle (within 97%) seque
4.1 years ago by robert.murphy ▴ 80
181 results • Page 3 of 4
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