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0
votes
0
replies
288
views
Datasets with RNA-seq and drug sensitivity data
drug
datasets
sra
RNA-seq
sensitivity
7 months ago by
octpus616
▴ 120
1
vote
0
replies
320
views
Extract all protein-coding genes from TxDb.
R
Granges
IRanges
Txdb
8 months ago by
octpus616
▴ 120
0
votes
0
replies
293
views
Calculate the Distribution of Peaks in 5'UTR, 3'UTR, and CDS of Transcripts Using R
R
RNA-seq
GRanges
8 months ago by
octpus616
▴ 120
0
votes
1
reply
620
views
Comment:
Comment: Biological replicate for WGS sequencing
9 months ago by
octpus616
▴ 120
2
votes
3
replies
620
views
Biological replicate for WGS sequencing
NGS
Biological
replicate
WGS
updated 9 months ago by
GenoMax
152k • written 9 months ago by
octpus616
▴ 120
0
votes
0
replies
672
views
Comment:
Comment: TSS sites annotation for hg38
13 months ago by
octpus616
▴ 120
1
vote
2
replies
672
views
TSS sites annotation for hg38
tss
hg38
annotation
13 months ago by
octpus616
▴ 120
0
votes
1
reply
577
views
Mouse ribosome sequences in fasta format
fasta
mm10
rRNA
updated 14 months ago by
GenoMax
152k • written 14 months ago by
octpus616
▴ 120
0
votes
0
replies
1.5k
views
Comment:
Comment: What is the relationship between Illumina P5 P7, universal adapters, and TruSeq
15 months ago by
octpus616
▴ 120
2
votes
2
replies
1.5k
views
What is the relationship between Illumina P5 P7, universal adapters, and TruSeq Adapter Index 7?
fastqc
NGS
15 months ago by
octpus616
▴ 120
1
vote
1
reply
435
views
How to Annotating Human Genomic Variants for Disease Associations?
R
variant-annotation
GWAS
updated 17 months ago by
Ram
45k • written 17 months ago by
octpus616
▴ 120
0
votes
0
replies
847
views
Comment:
Comment: ATCC cell line source
18 months ago by
octpus616
▴ 120
0
votes
2
replies
847
views
ATCC cell line source
cell-line
NGS
ATCC
18 months ago by
octpus616
▴ 120
1
vote
1
reply
1.7k
views
Comment:
Comment: How the first sequencing template removed in pair end sequencing
21 months ago by
octpus616
▴ 120
0
votes
0
replies
1.7k
views
Comment:
Comment: How the first sequencing product removed in pair end sequencing
21 months ago by
octpus616
▴ 120
5
votes
7
replies
1.7k
views
How the first sequencing template removed in pair end sequencing
NGS
RNA-seq
WGS
sequence
updated 21 months ago by
GenoMax
152k • written 21 months ago by
octpus616
▴ 120
0
votes
0
replies
460
views
how simply mutation annotation in R?
annotation
RNA-seq
Bioconductor
22 months ago by
octpus616
▴ 120
0
votes
0
replies
1.7k
views
Comment:
Comment: STAR mapping two pass mode for multiple samples with split steps or one step ?
22 months ago by
octpus616
▴ 120
0
votes
2
replies
1.7k
views
STAR mapping two pass mode for multiple samples with split steps or one step ?
STAR
RNA-seq
22 months ago by
octpus616
▴ 120
0
votes
0
replies
2.0k
views
Comment:
Comment: Best practices scRNA-seq guide for beginer
22 months ago by
octpus616
▴ 120
0
votes
0
replies
2.0k
views
Comment:
Comment: Best practices scRNA-seq guide for beginer
22 months ago by
octpus616
▴ 120
0
votes
1
reply
2.0k
views
Comment:
Comment: Best practices scRNA-seq guide for beginer
22 months ago by
octpus616
▴ 120
7
votes
6
replies
2.0k
views
Best practices scRNA-seq guide for beginer
scRNA-seq
eBook
22 months ago by
octpus616
▴ 120
0
votes
0
replies
541
views
Make a variation record dict from vcf by pysam quickly
pysam
python
vcf
22 months ago by
octpus616
▴ 120
0
votes
0
replies
1.4k
views
Comment:
Comment: How to convert dnsnp in UCSC to gtf
23 months ago by
octpus616
▴ 120
2
votes
4
replies
1.4k
views
How to convert dnsnp in UCSC to gtf
UCSC
dnsnp
gtf
23 months ago by
octpus616
▴ 120
0
votes
0
replies
1.4k
views
Comment:
Comment: How to convert dnsnp in UCSC to gtf
23 months ago by
octpus616
▴ 120
2
votes
1
reply
879
views
bedtools random without strand and no overlap
bedtools
genome
bed
updated 2.1 years ago by
ATpoint
88k • written 2.1 years ago by
octpus616
▴ 120
0
votes
0
replies
846
views
Comment:
Comment: Why is NA18498 sample missing from 1000 genome GRCh38 vcf file?
2.2 years ago by
octpus616
▴ 120
1
vote
2
replies
846
views
Why is NA18498 sample missing from 1000 genome GRCh38 vcf file?
NGS
vcf
1000
1kg
genome
2.2 years ago by
octpus616
▴ 120
0
votes
0
replies
579
views
rtracklayer import.chain not accpect chain file
R
rtracklayer
liftOver
2.2 years ago by
octpus616
▴ 120
6
votes
1
reply
1.0k
views
what is IGV visualization lighter color variants stand for
visualization
vcf
IGV
updated 2.3 years ago by
Jorge Amigo
14k • written 2.3 years ago by
octpus616
▴ 120
0
votes
0
replies
1.4k
views
Comment:
Comment: Calculation method of RMSMappingQuality
2.3 years ago by
octpus616
▴ 120
0
votes
2
replies
1.4k
views
Calculation method of RMSMappingQuality
NGS
bam
samtools
vcf
2.3 years ago by
octpus616
▴ 120
0
votes
0
replies
625
views
How to shift the position of multiallelic variants for phasing analysis with SHAPEIT2?
vcf
bcftools
shapeit2
phase
NGS
updated 2.0 years ago by
Ram
45k • written 2.3 years ago by
octpus616
▴ 120
0
votes
0
replies
489
views
Get RMS MQ for specific POS
vcf
bam
MQ
2.3 years ago by
octpus616
▴ 120
2
votes
1
reply
983
views
bcftools merge without multiallelic sites
NGS
bcftools
vcf
updated 2.3 years ago by
raphael.B
▴ 540 • written 2.3 years ago by
octpus616
▴ 120
0
votes
0
replies
2.6k
views
Comment:
Comment: Does running samtools sort in parallel result in unexpected output due to tempor
2.4 years ago by
octpus616
▴ 120
0
votes
0
replies
2.6k
views
Comment:
Comment: Does running samtools sort in parallel result in unexpected output due to tempor
2.4 years ago by
octpus616
▴ 120
0
votes
0
replies
2.6k
views
Comment:
Comment: Does running samtools sort in parallel result in unexpected output due to tempor
2.4 years ago by
octpus616
▴ 120
3
votes
7
replies
2.6k
views
Does running samtools sort in parallel result in unexpected output due to temporary file conflicts?
NGS
samtools
bam
updated 2.0 years ago by
Ram
45k • written 2.4 years ago by
octpus616
▴ 120
0
votes
0
replies
656
views
Annotate a series of genomic intervals using R as detailed as possible
bed
bioconductor
annotation
R
2.4 years ago by
octpus616
▴ 120
0
votes
0
replies
696
views
What is the different bewteen ucsc simple repeat and tandem repeat
reference
USCS
annotation
hg38
2.4 years ago by
octpus616
▴ 120
0
votes
0
replies
2.5k
views
Comment:
Comment: samtools calmd and original base quality
2.4 years ago by
octpus616
▴ 120
2
votes
2
replies
2.5k
views
samtools calmd and original base quality
NGS
bam
samtools
2.4 years ago by
octpus616
▴ 120
0
votes
0
replies
1.3k
views
Comment:
Comment: GATK haplotypeCaller output MQ in vcf for non variant sites
2.5 years ago by
octpus616
▴ 120
0
votes
2
replies
1.3k
views
GATK haplotypeCaller output MQ in vcf for non variant sites
vcf
MQ
GATK
NGS
2.5 years ago by
octpus616
▴ 120
0
votes
1
reply
1.9k
views
Comment:
Comment: Get length of the alignment from bam file with shell
2.5 years ago by
octpus616
▴ 120
1
vote
2
replies
1.9k
views
Comment:
Comment: Get length of the alignment from bam file with shell
2.5 years ago by
octpus616
▴ 120
1
vote
6
replies
1.9k
views
Get length of the alignment from bam file with shell
NGS
sam
pysam
samtools
bam
updated 2.5 years ago by
cmdcolin
★ 4.2k • written 2.5 years ago by
octpus616
▴ 120
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