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410
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Datasets with RNA-seq and drug sensitivity data
drug datasets sra RNA-seq sensitivity
11 months ago by octpus616 ▴ 120
1
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0
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432
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Extract all protein-coding genes from TxDb.
R Granges IRanges Txdb
12 months ago by octpus616 ▴ 120
0
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0
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438
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Calculate the Distribution of Peaks in 5'UTR, 3'UTR, and CDS of Transcripts Using R
R RNA-seq GRanges
12 months ago by octpus616 ▴ 120
0
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1
reply
855
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Comment: Comment: Biological replicate for WGS sequencing
13 months ago by octpus616 ▴ 120
2
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3
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855
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Biological replicate for WGS sequencing
NGS Biological replicate WGS
updated 13 months ago by 154k • written 13 months ago by ▴ 120
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0
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840
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Comment: Comment: TSS sites annotation for hg38
17 months ago by octpus616 ▴ 120
1
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2
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840
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TSS sites annotation for hg38
tss hg38 annotation
17 months ago by octpus616 ▴ 120
0
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1
reply
804
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Mouse ribosome sequences in fasta format
fasta mm10 rRNA
updated 18 months ago by 154k • written 18 months ago by ▴ 120
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0
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2.2k
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Comment: Comment: What is the relationship between Illumina P5 P7, universal adapters, and TruSeq
19 months ago by octpus616 ▴ 120
2
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2
replies
2.2k
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What is the relationship between Illumina P5 P7, universal adapters, and TruSeq Adapter Index 7?
fastqc NGS
19 months ago by octpus616 ▴ 120
1
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1
reply
523
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How to Annotating Human Genomic Variants for Disease Associations?
R variant-annotation GWAS
updated 21 months ago by 45k • written 21 months ago by ▴ 120
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0
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1.0k
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Comment: Comment: ATCC cell line source
22 months ago by octpus616 ▴ 120
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2
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1.0k
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ATCC cell line source
cell-line NGS ATCC
22 months ago by octpus616 ▴ 120
1
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1
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2.0k
views
Comment: Comment: How the first sequencing template removed in pair end sequencing
2.1 years ago by octpus616 ▴ 120
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0
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2.0k
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Comment: Comment: How the first sequencing product removed in pair end sequencing
2.1 years ago by octpus616 ▴ 120
5
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7
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2.0k
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How the first sequencing template removed in pair end sequencing
NGS RNA-seq WGS sequence
updated 2.1 years ago by 154k • written 2.1 years ago by ▴ 120
0
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0
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576
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how simply mutation annotation in R?
annotation RNA-seq Bioconductor
2.1 years ago by octpus616 ▴ 120
0
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0
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1.9k
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Comment: Comment: STAR mapping two pass mode for multiple samples with split steps or one step ?
2.2 years ago by octpus616 ▴ 120
0
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2
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1.9k
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STAR mapping two pass mode for multiple samples with split steps or one step ?
STAR RNA-seq
2.2 years ago by octpus616 ▴ 120
0
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0
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2.3k
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Comment: Comment: Best practices scRNA-seq guide for beginer
2.2 years ago by octpus616 ▴ 120
0
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0
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2.3k
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Comment: Comment: Best practices scRNA-seq guide for beginer
2.2 years ago by octpus616 ▴ 120
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1
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2.3k
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Comment: Comment: Best practices scRNA-seq guide for beginer
2.2 years ago by octpus616 ▴ 120
7
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6
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2.3k
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Best practices scRNA-seq guide for beginer
scRNA-seq eBook
2.2 years ago by octpus616 ▴ 120
0
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0
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668
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Make a variation record dict from vcf by pysam quickly
pysam python vcf
2.2 years ago by octpus616 ▴ 120
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0
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1.6k
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Comment: Comment: How to convert dnsnp in UCSC to gtf
2.2 years ago by octpus616 ▴ 120
2
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4
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1.6k
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How to convert dnsnp in UCSC to gtf
UCSC dnsnp gtf
2.2 years ago by octpus616 ▴ 120
0
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0
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1.6k
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Comment: Comment: How to convert dnsnp in UCSC to gtf
2.2 years ago by octpus616 ▴ 120
2
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1
reply
1.0k
views
bedtools random without strand and no overlap
bedtools genome bed
updated 2.4 years ago by 90k • written 2.4 years ago by ▴ 120
0
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0
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992
views
Comment: Comment: Why is NA18498 sample missing from 1000 genome GRCh38 vcf file?
2.5 years ago by octpus616 ▴ 120
1
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2
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992
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Why is NA18498 sample missing from 1000 genome GRCh38 vcf file?
NGS vcf 1000 1kg genome
2.5 years ago by octpus616 ▴ 120
0
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0
replies
690
views
rtracklayer import.chain not accpect chain file
R rtracklayer liftOver
2.5 years ago by octpus616 ▴ 120
6
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1
reply
1.1k
views
what is IGV visualization lighter color variants stand for
visualization vcf IGV
updated 2.6 years ago by 14k • written 2.6 years ago by ▴ 120
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0
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1.6k
views
Comment: Comment: Calculation method of RMSMappingQuality
2.6 years ago by octpus616 ▴ 120
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2
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1.6k
views
Calculation method of RMSMappingQuality
NGS bam samtools vcf
2.6 years ago by octpus616 ▴ 120
0
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0
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731
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How to shift the position of multiallelic variants for phasing analysis with SHAPEIT2?
vcf bcftools shapeit2 phase NGS
updated 2.4 years ago by 45k • written 2.6 years ago by ▴ 120
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0
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549
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Get RMS MQ for specific POS
vcf bam MQ
2.7 years ago by octpus616 ▴ 120
2
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1
reply
1.1k
views
bcftools merge without multiallelic sites
NGS bcftools vcf
updated 2.7 years ago by ▴ 540 • written 2.7 years ago by ▴ 120
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0
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3.0k
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Comment: Comment: Does running samtools sort in parallel result in unexpected output due to tempor
2.7 years ago by octpus616 ▴ 120
0
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0
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3.0k
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Comment: Comment: Does running samtools sort in parallel result in unexpected output due to tempor
2.7 years ago by octpus616 ▴ 120
0
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0
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3.0k
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Comment: Comment: Does running samtools sort in parallel result in unexpected output due to tempor
2.7 years ago by octpus616 ▴ 120
3
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7
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3.0k
views
Does running samtools sort in parallel result in unexpected output due to temporary file conflicts?
NGS samtools bam
updated 2.4 years ago by 45k • written 2.7 years ago by ▴ 120
0
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0
replies
713
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Annotate a series of genomic intervals using R as detailed as possible
bed bioconductor annotation R
2.7 years ago by octpus616 ▴ 120
0
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0
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809
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What is the different bewteen ucsc simple repeat and tandem repeat
reference USCS annotation hg38
2.7 years ago by octpus616 ▴ 120
0
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0
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2.9k
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Comment: Comment: samtools calmd and original base quality
2.7 years ago by octpus616 ▴ 120
2
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2
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2.9k
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samtools calmd and original base quality
NGS bam samtools
2.7 years ago by octpus616 ▴ 120
0
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0
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1.5k
views
Comment: Comment: GATK haplotypeCaller output MQ in vcf for non variant sites
2.8 years ago by octpus616 ▴ 120
0
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2
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1.5k
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GATK haplotypeCaller output MQ in vcf for non variant sites
vcf MQ GATK NGS
2.8 years ago by octpus616 ▴ 120
0
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1
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2.1k
views
Comment: Comment: Get length of the alignment from bam file with shell
2.8 years ago by octpus616 ▴ 120
1
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2
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2.1k
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Comment: Comment: Get length of the alignment from bam file with shell
2.8 years ago by octpus616 ▴ 120
1
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6
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2.1k
views
Get length of the alignment from bam file with shell
NGS sam pysam samtools bam
updated 2.8 years ago by ★ 4.4k • written 2.8 years ago by ▴ 120
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