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360
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Datasets with RNA-seq and drug sensitivity data
drug datasets sra RNA-seq sensitivity
10 months ago by octpus616 ▴ 120
1
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0
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385
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Extract all protein-coding genes from TxDb.
R Granges IRanges Txdb
10 months ago by octpus616 ▴ 120
0
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0
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366
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Calculate the Distribution of Peaks in 5'UTR, 3'UTR, and CDS of Transcripts Using R
R RNA-seq GRanges
10 months ago by octpus616 ▴ 120
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1
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728
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Comment: Comment: Biological replicate for WGS sequencing
12 months ago by octpus616 ▴ 120
2
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3
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728
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Biological replicate for WGS sequencing
NGS Biological replicate WGS
updated 12 months ago by 153k • written 12 months ago by ▴ 120
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0
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751
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Comment: Comment: TSS sites annotation for hg38
15 months ago by octpus616 ▴ 120
1
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2
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751
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TSS sites annotation for hg38
tss hg38 annotation
15 months ago by octpus616 ▴ 120
0
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1
reply
686
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Mouse ribosome sequences in fasta format
fasta mm10 rRNA
updated 16 months ago by 153k • written 16 months ago by ▴ 120
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0
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1.8k
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Comment: Comment: What is the relationship between Illumina P5 P7, universal adapters, and TruSeq
17 months ago by octpus616 ▴ 120
2
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2
replies
1.8k
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What is the relationship between Illumina P5 P7, universal adapters, and TruSeq Adapter Index 7?
fastqc NGS
17 months ago by octpus616 ▴ 120
1
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1
reply
479
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How to Annotating Human Genomic Variants for Disease Associations?
R variant-annotation GWAS
updated 20 months ago by 45k • written 20 months ago by ▴ 120
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0
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920
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Comment: Comment: ATCC cell line source
21 months ago by octpus616 ▴ 120
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2
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920
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ATCC cell line source
cell-line NGS ATCC
21 months ago by octpus616 ▴ 120
1
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1
reply
1.8k
views
Comment: Comment: How the first sequencing template removed in pair end sequencing
24 months ago by octpus616 ▴ 120
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0
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1.8k
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Comment: Comment: How the first sequencing product removed in pair end sequencing
24 months ago by octpus616 ▴ 120
5
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7
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1.8k
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How the first sequencing template removed in pair end sequencing
NGS RNA-seq WGS sequence
updated 24 months ago by 153k • written 24 months ago by ▴ 120
0
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0
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511
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how simply mutation annotation in R?
annotation RNA-seq Bioconductor
2.0 years ago by octpus616 ▴ 120
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0
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1.8k
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Comment: Comment: STAR mapping two pass mode for multiple samples with split steps or one step ?
2.0 years ago by octpus616 ▴ 120
0
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2
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1.8k
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STAR mapping two pass mode for multiple samples with split steps or one step ?
STAR RNA-seq
2.0 years ago by octpus616 ▴ 120
0
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0
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2.2k
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Comment: Comment: Best practices scRNA-seq guide for beginer
2.1 years ago by octpus616 ▴ 120
0
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0
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2.2k
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Comment: Comment: Best practices scRNA-seq guide for beginer
2.1 years ago by octpus616 ▴ 120
0
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1
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2.2k
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Comment: Comment: Best practices scRNA-seq guide for beginer
2.1 years ago by octpus616 ▴ 120
7
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6
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2.2k
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Best practices scRNA-seq guide for beginer
scRNA-seq eBook
2.1 years ago by octpus616 ▴ 120
0
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0
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594
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Make a variation record dict from vcf by pysam quickly
pysam python vcf
2.1 years ago by octpus616 ▴ 120
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0
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1.5k
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Comment: Comment: How to convert dnsnp in UCSC to gtf
2.1 years ago by octpus616 ▴ 120
2
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4
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1.5k
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How to convert dnsnp in UCSC to gtf
UCSC dnsnp gtf
2.1 years ago by octpus616 ▴ 120
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0
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1.5k
views
Comment: Comment: How to convert dnsnp in UCSC to gtf
2.1 years ago by octpus616 ▴ 120
2
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1
reply
951
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bedtools random without strand and no overlap
bedtools genome bed
updated 2.3 years ago by 89k • written 2.3 years ago by ▴ 120
0
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0
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918
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Comment: Comment: Why is NA18498 sample missing from 1000 genome GRCh38 vcf file?
2.4 years ago by octpus616 ▴ 120
1
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2
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918
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Why is NA18498 sample missing from 1000 genome GRCh38 vcf file?
NGS vcf 1000 1kg genome
2.4 years ago by octpus616 ▴ 120
0
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0
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630
views
rtracklayer import.chain not accpect chain file
R rtracklayer liftOver
2.4 years ago by octpus616 ▴ 120
6
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1
reply
1.1k
views
what is IGV visualization lighter color variants stand for
visualization vcf IGV
updated 2.5 years ago by 14k • written 2.5 years ago by ▴ 120
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0
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1.5k
views
Comment: Comment: Calculation method of RMSMappingQuality
2.5 years ago by octpus616 ▴ 120
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2
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1.5k
views
Calculation method of RMSMappingQuality
NGS bam samtools vcf
2.5 years ago by octpus616 ▴ 120
0
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0
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677
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How to shift the position of multiallelic variants for phasing analysis with SHAPEIT2?
vcf bcftools shapeit2 phase NGS
updated 2.3 years ago by 45k • written 2.5 years ago by ▴ 120
0
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0
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509
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Get RMS MQ for specific POS
vcf bam MQ
2.5 years ago by octpus616 ▴ 120
2
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1
reply
1.0k
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bcftools merge without multiallelic sites
NGS bcftools vcf
updated 2.5 years ago by ▴ 540 • written 2.5 years ago by ▴ 120
0
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0
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2.8k
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Comment: Comment: Does running samtools sort in parallel result in unexpected output due to tempor
2.6 years ago by octpus616 ▴ 120
0
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0
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2.8k
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Comment: Comment: Does running samtools sort in parallel result in unexpected output due to tempor
2.6 years ago by octpus616 ▴ 120
0
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0
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2.8k
views
Comment: Comment: Does running samtools sort in parallel result in unexpected output due to tempor
2.6 years ago by octpus616 ▴ 120
3
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7
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2.8k
views
Does running samtools sort in parallel result in unexpected output due to temporary file conflicts?
NGS samtools bam
updated 2.3 years ago by 45k • written 2.6 years ago by ▴ 120
0
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0
replies
683
views
Annotate a series of genomic intervals using R as detailed as possible
bed bioconductor annotation R
2.6 years ago by octpus616 ▴ 120
0
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0
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746
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What is the different bewteen ucsc simple repeat and tandem repeat
reference USCS annotation hg38
2.6 years ago by octpus616 ▴ 120
0
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0
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2.7k
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Comment: Comment: samtools calmd and original base quality
2.6 years ago by octpus616 ▴ 120
2
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2
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2.7k
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samtools calmd and original base quality
NGS bam samtools
2.6 years ago by octpus616 ▴ 120
0
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0
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1.4k
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Comment: Comment: GATK haplotypeCaller output MQ in vcf for non variant sites
2.7 years ago by octpus616 ▴ 120
0
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2
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1.4k
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GATK haplotypeCaller output MQ in vcf for non variant sites
vcf MQ GATK NGS
2.7 years ago by octpus616 ▴ 120
0
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1
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2.0k
views
Comment: Comment: Get length of the alignment from bam file with shell
2.7 years ago by octpus616 ▴ 120
1
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2
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2.0k
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Comment: Comment: Get length of the alignment from bam file with shell
2.7 years ago by octpus616 ▴ 120
1
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6
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2.0k
views
Get length of the alignment from bam file with shell
NGS sam pysam samtools bam
updated 2.7 years ago by ★ 4.3k • written 2.7 years ago by ▴ 120
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