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4
votes
4
replies
5.6k
views
TRF output to .gff file
next-gen
updated 2.7 years ago by ▴ 40 • written 11.5 years ago by ▴ 320
1
vote
3
replies
4.8k
views
How to polarize ancestral versus derived alleles?
next-gen SNP
updated 4.0 years ago by • 0 • written 8.1 years ago by ▴ 320
0
votes
0
replies
5.1k
views
Answer: A: Mrbayes: Consensus Trees Comparison
updated 5.9 years ago by 45k • written 11.5 years ago by ▴ 320
2
votes
1
reply
4.2k
views
How to convert mutation position from gene coordinate to genome coordinate?
coordinate SNP
updated 7.1 years ago by ★ 3.4k • written 7.1 years ago by ▴ 320
0
votes
1
reply
2.0k
views
Comment: C: Should I replace heterozygous variants to make a consensus
7.1 years ago by Alice ▴ 320
1
vote
1
reply
3.1k
views
Answer: C: How to merge two haploid samples (vcf, or g.vcf) into a pseudo-diploid?
7.1 years ago by Alice ▴ 320
1
vote
0
replies
5.6k
views
Comment: C: Extract a subset of fasta file based on header in python
7.1 years ago by Alice ▴ 320
0
votes
0
replies
4.2k
views
Comment: C: Compare samples in one multisample VCF file
updated 7.1 years ago by 45k • written 9.7 years ago by ▴ 320
0
votes
1
reply
4.2k
views
Comment: C: Compare samples in one multisample VCF file
updated 7.1 years ago by 45k • written 9.7 years ago by ▴ 320
0
votes
0
replies
2.8k
views
Comment: C: VCF SNP analysis
7.5 years ago by Alice ▴ 320
1
vote
1
reply
2.1k
views
Using GFF3Writer in Biopython
biopython gff gff3 ensembl
updated 7.5 years ago by 16k • written 7.5 years ago by ▴ 320
0
votes
0
replies
1.8k
views
Comment: C: Select union of multiple-sample VCF
7.5 years ago by Alice ▴ 320
3
votes
1
reply
2.5k
views
Answer: C: Filtering a vcf based on known variants
7.5 years ago by Alice ▴ 320
0
votes
0
replies
2.4k
views
Comment: C: How to check if BAM is indel-realigned?
7.5 years ago by Alice ▴ 320
1
vote
0
replies
5.9k
views
Comment: C: Difference between Allele frequency spectrum and Joint allele frequency spectrum
7.5 years ago by Alice ▴ 320
3
votes
2
replies
2.4k
views
How to check if BAM is indel-realigned?
gatk indel-realignment BAM alignment
7.5 years ago by Alice ▴ 320
5
votes
1
reply
5.9k
views
Answer: A: Difference between Allele frequency spectrum and Joint allele frequency spectrum
7.5 years ago by Alice ▴ 320
0
votes
1
reply
1.6k
views
Simulate genotype likelihoods
SNP variant calling vcf
updated 7.8 years ago by 20 • written 7.8 years ago by ▴ 320
5
votes
2
replies
7.3k
views
Recombination rate per base per generation
recombination coalescence psmc ms
updated 7.9 years ago by ▴ 30 • written 8.0 years ago by ▴ 320
1
vote
0
replies
3.1k
views
Answer: A: Completely confused about terminology and what I'm actually analysing here
8.0 years ago by Alice ▴ 320
1
vote
0
replies
7.3k
views
Answer: A: Recombination rate per base per generation
8.0 years ago by Alice ▴ 320
0
votes
0
replies
7.9k
views
Comment: C: Psmc Parameters To Use
8.0 years ago by Alice ▴ 320
2
votes
1
reply
3.0k
views
Comment: C: How to start analyzing next-generation DNA and RNA sequencing data?
8.1 years ago by Alice ▴ 320
1
vote
1
reply
3.0k
views
Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
8.1 years ago by Alice ▴ 320
0
votes
0
replies
4.8k
views
Comment: C: How to polarize ancestral versus derived alleles?
8.1 years ago by Alice ▴ 320
0
votes
0
replies
2.6k
views
Comment: C: error in ncbi genome submission
8.1 years ago by Alice ▴ 320
1
vote
1
reply
2.6k
views
Comment: C: error in ncbi genome submission
8.1 years ago by Alice ▴ 320
3
votes
4
replies
4.2k
views
Compare samples in one multisample VCF file
next-gen SNP
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 320
8
votes
2
replies
7.4k
views
R:Root {Ape} Problem With Rerooting Ultrametric Trees
r phylogeny
updated 10.6 years ago by 20 • written 12.6 years ago by ▴ 320
1
vote
1
reply
1.9k
views
Comment: Comment: I'm lost... model selection, criteria,
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 320
2
votes
1
reply
2.1k
views
Parser to provide references to publications and ID numbers from GenBank
python sequencing
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 320
1
vote
1
reply
3.4k
views
Comment: Comment: How to annotate splicing sites, ESEs and ESSs in a gene
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 320
1
vote
5
replies
5.3k
views
Clip Adapters In Sanger Sequencing Traces
fasta
updated 11.5 years ago by 3.9k • written 12.0 years ago by ▴ 320
7
votes
4
replies
5.1k
views
Mrbayes: Consensus Trees Comparison
phylogenetics phylogeny
11.5 years ago by Alice ▴ 320
0
votes
0
replies
5.6k
views
Comment: C: TRF output to .gff file
11.5 years ago by Alice ▴ 320
0
votes
0
replies
16k
views
Comment: C: Concatenate Two .Fasta Files Into One
11.9 years ago by Alice ▴ 320
0
votes
0
replies
16k
views
Comment: C: Concatenate Two .Fasta Files Into One
11.9 years ago by Alice ▴ 320
0
votes
0
replies
16k
views
Comment: C: Concatenate Two .Fasta Files Into One
11.9 years ago by Alice ▴ 320
0
votes
1
reply
16k
views
Comment: C: Concatenate Two .Fasta Files Into One
11.9 years ago by Alice ▴ 320
0
votes
1
reply
16k
views
Comment: C: Concatenate Two .Fasta Files Into One
11.9 years ago by Alice ▴ 320
8
votes
18
replies
16k
views
Concatenate Two .Fasta Files Into One
fasta r
updated 3.2 years ago by 45k • written 11.9 years ago by ▴ 320
0
votes
1
reply
16k
views
Comment: C: Concatenate Two .Fasta Files Into One
11.9 years ago by Alice ▴ 320
0
votes
1
reply
16k
views
Comment: C: Concatenate Two .Fasta Files Into One
11.9 years ago by Alice ▴ 320
0
votes
0
replies
16k
views
Comment: C: Concatenate Two .Fasta Files Into One
11.9 years ago by Alice ▴ 320
0
votes
0
replies
5.3k
views
Comment: C: Clip Adapters In Sanger Sequensing Traces
12.0 years ago by Alice ▴ 320
0
votes
1
reply
5.3k
views
Comment: C: Clip Adapters In Sanger Sequensing Traces
12.0 years ago by Alice ▴ 320
1
vote
2
replies
3.3k
views
R:Fitcontinuous. Comparison Of Models By Aicc Weights (Density Plot Interpretation)
r phylogenetics statistics
updated 12.0 years ago by 20 • written 12.6 years ago by ▴ 320
0
votes
1
reply
2.8k
views
How To Count K-Mers On Solid Data?
solid fastq
updated 12.1 years ago by 16k • written 12.1 years ago by ▴ 320
0
votes
0
replies
6.7k
views
Comment: C: Is It Possible To Use And Cite Ncbi Geo Datasets That Don'T Have A Already-Publi
12.1 years ago by Alice ▴ 320
0
votes
0
replies
9.9k
views
Comment: C: K-Mer Counting From Single-End, Paired-End And Mate-Pair Reads
12.1 years ago by Alice ▴ 320
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