Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
0
replies
7.4k
views
Comment: Comment: How to find CpG island shore?
12 months ago by Pratik ▴ 940
0
votes
1
reply
7.4k
views
Answer: Answer: How to find CpG island shore?
12 months ago by Pratik ▴ 940
4
votes
1
reply
547
views
When running salmon or star_salmon , are samples “independent” from one another during quantification (ie. to remove low quality samples after a mult…
salmon pre-processing star_salmon rna-seq
updated 14 months ago by 78k • written 14 months ago by ▴ 940
0
votes
0
replies
514
views
Job: Research Technician – Computational Biology Core - (UConn CBC) - Connecticut
connecticut technician
updated 11 months ago by 41k • written 14 months ago by ▴ 940
12
votes
3
replies
708
views
Conceptual questions regarding computational genome/annotation versions and their impact on the actual truth of sequencing?
wes sequencing wgs rna-seq
updated 14 months ago by 3.8k • written 14 months ago by ▴ 940
0
votes
0
replies
715
views
Comment: Comment: Pros and Cons of DNA Mass Spectrometry versus WES/WGS?
15 months ago by Pratik ▴ 940
3
votes
2
replies
715
views
Pros and Cons of DNA Mass Spectrometry versus WES/WGS?
spec mass wes dna wgs
15 months ago by Pratik ▴ 940
0
votes
1
reply
5.3k
views
Comment: Comment: What is a count matrix for input into Seurat supposed to look like?
18 months ago by Pratik ▴ 940
0
votes
0
replies
32k
views
Comment: Comment: How to embed known cell information into Seurat object? AddMetaData?
19 months ago by Pratik ▴ 940
0
votes
0
replies
1.5k
views
Comment: Comment: Seurat subset cluster cell annotation
22 months ago by Pratik ▴ 940
2
votes
0
replies
1.2k
views
Answer: Answer: scSeq millions of cells
22 months ago by Pratik ▴ 940
1
vote
1
reply
1.3k
views
Comment: Comment: Forcing Seurat to include certain genes during integration
23 months ago by Pratik ▴ 940
0
votes
1
reply
1.5k
views
Answer: Answer: scRNA seq differential gene expression analyses
23 months ago by Pratik ▴ 940
10
votes
4
replies
12k
views
How to use FindSubCluster in Seurat?
seurat R single cell RNA-seq
updated 23 months ago by • 0 • written 2.8 years ago by ▴ 940
0
votes
0
replies
5.3k
views
Comment: Comment: What is a count matrix for input into Seurat supposed to look like?
24 months ago by Pratik ▴ 940
6
votes
10
replies
5.3k
views
What is a count matrix for input into Seurat supposed to look like?
R RNA-Seq Monocle3 Seurat
updated 18 months ago by 41k • written 3.3 years ago by ▴ 940
2
votes
1
reply
1.5k
views
Answer: Answer: how to find each cluster in single-cell represent which cell type?
2.0 years ago by Pratik ▴ 940
3
votes
1
reply
958
views
Answer: Answer: How do I download a list of genes involved in cellular metabolism (in humans) ba
2.0 years ago by Pratik ▴ 940
0
votes
1
reply
2.1k
views
Comment: Comment: How to quickly find and filter coexpressed markers with one specific gene of int
2.0 years ago by Pratik ▴ 940
1
vote
3
replies
2.1k
views
How to quickly find and filter coexpressed markers with one specific gene of interest in individual cells using scRNA-seq data?
scRNA-seq Seurat coexpression
updated 2.0 years ago by ▴ 240 • written 2.0 years ago by ▴ 940
1
vote
0
replies
708
views
Comment: Comment: PathFindR: Running Reactome for Mouse
2.0 years ago by Pratik ▴ 940
0
votes
0
replies
563
views
Comment: Comment: Finding players and targets of expression-regulating pathways
23 months ago by Pratik ▴ 940
0
votes
0
replies
2.4k
views
Comment: Comment: How to compare expression levels of specific genes between sample groups after g
2.0 years ago by Pratik ▴ 940
0
votes
2
replies
2.4k
views
Comment: Comment: How to compare expression levels of specific genes between sample groups after g
2.0 years ago by Pratik ▴ 940
6
votes
6
replies
2.4k
views
How to compare expression levels of specific genes between sample groups after generating DEG list?
RNA-seq TMM edgeR
2.0 years ago by Pratik ▴ 940
0
votes
1
reply
901
views
Comment: Comment: How to create shiny app for deseq2 object creation
2.1 years ago by Pratik ▴ 940
0
votes
0
replies
898
views
Answer: Answer: Entry level jobs
2.1 years ago by Pratik ▴ 940
5
votes
0
replies
963
views
Answer: Answer: General question about clustering in scRNAseq
2.1 years ago by Pratik ▴ 940
2
votes
1
reply
695
views
Is a single dot on a UMAP or t-SNE for scRNA-seq - a single cell?
scRNA-seq
updated 2.1 years ago by ★ 16k • written 2.1 years ago by ▴ 940
0
votes
0
replies
1.6k
views
Answer: Answer: How to show relabel sub cluster on the original cluster in Seurat
2.2 years ago by Pratik ▴ 940
1
vote
0
replies
1.5k
views
Answer: Answer: Database for Enhancers with Coordinates
2.2 years ago by Pratik ▴ 940
1
vote
1
reply
771
views
Answer: Answer: Pathogen-drug network
2.2 years ago by Pratik ▴ 940
0
votes
0
replies
871
views
Comment: Comment: Chromosome sizes downloading (in bp).
2.2 years ago by Pratik ▴ 940
0
votes
0
replies
1.5k
views
Comment: Comment: How to rename the elements in columns(txdb)?
2.2 years ago by Pratik ▴ 940
4
votes
3
replies
1.5k
views
How to rename the elements in columns(txdb)?
GenomicFeatures GenomicRanges GenomeInfoDb
2.2 years ago by Pratik ▴ 940
0
votes
0
replies
1.5k
views
Comment: Comment: How to rename the elements from columns(txdb)?
2.2 years ago by Pratik ▴ 940
0
votes
0
replies
5.2k
views
Answer: Answer: Extracting exons and transcripts from gff3/gtf
2.2 years ago by Pratik ▴ 940
0
votes
0
replies
1.5k
views
Comment: Comment: Good or bad idea to annotate with newer genome build?
2.2 years ago by Pratik ▴ 940
1
vote
0
replies
1.5k
views
Comment: Comment: Good or bad idea to annotate with newer genome build?
2.2 years ago by Pratik ▴ 940
4
votes
4
replies
1.5k
views
Good or bad idea to annotate with newer genome build?
array methylation beadchip build annotation
2.2 years ago by Pratik ▴ 940
0
votes
0
replies
683
views
Why is there not a intronsBy() function in GenomicFeatures? only intronsByTranscript()?
GenomicRanges GenomicFeatures genic introns intronsbytranscript
2.3 years ago by Pratik ▴ 940
1
vote
1
reply
1.2k
views
Comment: Comment: Is removing strand information when obtaining intergenic regions from GRanges ne
2.3 years ago by Pratik ▴ 940
1
vote
0
replies
6.1k
views
Comment: Comment: How to transform the deg gene list from seurat to a gene list input to clusterPr
2.3 years ago by Pratik ▴ 940
0
votes
0
replies
3.8k
views
Comment: Comment: Differential Gene Expression
2.3 years ago by Pratik ▴ 940
1
vote
2
replies
3.8k
views
Comment: Comment: Differential Gene Expression
2.3 years ago by Pratik ▴ 940
1
vote
1
reply
3.8k
views
Comment: Comment: Differential Gene Expression
2.3 years ago by Pratik ▴ 940
5
votes
3
replies
1.2k
views
Is removing strand information when obtaining intergenic regions from GRanges necessary?
GenomicRanges methylation strand intergenic genic
updated 2.3 years ago by 8.4k • written 2.3 years ago by ▴ 940
4
votes
1
reply
3.8k
views
Answer: Answer: Differential Gene Expression
2.3 years ago by Pratik ▴ 940
0
votes
0
replies
39k
views
Comment: Comment: Get chromosome sizes from fasta file
2.3 years ago by Pratik ▴ 940
2
votes
1
reply
834
views
Answer: Answer: Internship in research
2.3 years ago by Pratik ▴ 940
164 results • Page 1 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6