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4
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1
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5.2k
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Answer: C: interpreting GC-bias compute and correct results from DeepTools
5.2 years ago by Devon Ryan 105k
0
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0
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5.6k
views
Comment: C: Y axis PlotHeatMap Deeptools
5.2 years ago by Devon Ryan 105k
3
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0
replies
4.8k
views
Comment: C: How to tell if a BigWig file is 1-based or 0-based?
5.2 years ago by Devon Ryan 105k
1
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0
replies
2.6k
views
Comment: C: conda installation error in hypo
5.3 years ago by Devon Ryan 105k
4
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2
replies
3.5k
views
Answer: C: <DESeqDataSet>[i,] index out of bounds - subsetting DESeqDataSet
5.3 years ago by Devon Ryan 105k
2
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1
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2.6k
views
Answer: A: conda installation error in hypo
5.3 years ago by Devon Ryan 105k
0
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0
replies
1.7k
views
Comment: C: Design for a two-gene mechanism in DESeq2
5.3 years ago by Devon Ryan 105k
0
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0
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13k
views
Comment: C: Beta-values, M-values and thresholds on effect size
5.3 years ago by Devon Ryan 105k
1
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1
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1.8k
views
Comment: C: Which tool is best for getting genomic data analysis?
5.3 years ago by Devon Ryan 105k
1
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0
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2.6k
views
Answer: A: Deeptools heatmap analysis - graphing unique clusters of heatmap
5.3 years ago by Devon Ryan 105k
0
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0
replies
6.8k
views
Comment: C: Quantifying repetitive elements from RNA-seq (hisat2 or Salmon)
5.3 years ago by Devon Ryan 105k
0
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0
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3.7k
views
Comment: C: CNVkit, robust genome-wide copy number detection from DNA sequencing
5.4 years ago by Devon Ryan 105k
1
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2
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6.3k
views
Comment: C: CNVKit noisy scatter plot
5.4 years ago by Devon Ryan 105k
2
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1
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4.2k
views
Answer: A: When should one be concerned about the CG content in RNA-seq experiment?
5.4 years ago by Devon Ryan 105k
0
votes
1
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12k
views
Comment: C: STAR genomeLoad issue
5.4 years ago by Devon Ryan 105k
1
vote
0
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1.7k
views
Answer: A: How to interpret the exon numbering for minus strand?
5.4 years ago by Devon Ryan 105k
3
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2
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2.8k
views
Answer: A: PCR duplicates in RRBS data
5.4 years ago by Devon Ryan 105k
1
vote
1
reply
1.6k
views
Comment: C: Which DE method perform better for small number of genes
5.4 years ago by Devon Ryan 105k
1
vote
1
reply
1.6k
views
Answer: A: Which DE method perform better for small number of genes
5.4 years ago by Devon Ryan 105k
1
vote
1
reply
6.6k
views
Comment: C: Is there any C API documentation for HTSLIB?
5.4 years ago by Devon Ryan 105k
2
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0
replies
2.0k
views
Answer: A: how to do normalization in edgeR
5.4 years ago by Devon Ryan 105k
2
votes
0
replies
10k
views
Comment: C: Remove supplementary alignments from a bam file
5.4 years ago by Devon Ryan 105k
5
votes
1
reply
10k
views
Answer: A: Remove supplementary alignments from a bam file
5.4 years ago by Devon Ryan 105k
1
vote
0
replies
1.4k
views
Answer: A: How to upload a custom genome build at Galaxy
updated 5.4 years ago by 89k • written 5.4 years ago by 105k
0
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0
replies
5.3k
views
Comment: C: KentUtils installation issue
5.4 years ago by Devon Ryan 105k
1
vote
1
reply
5.3k
views
Comment: C: KentUtils installation issue
5.5 years ago by Devon Ryan 105k
0
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1
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5.3k
views
Comment: C: KentUtils installation issue
5.5 years ago by Devon Ryan 105k
0
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0
replies
3.0k
views
Comment: C: bedGraphToBigWig file converter
5.5 years ago by Devon Ryan 105k
1
vote
1
reply
2.7k
views
Answer: C: Snakemake - Missing MissingInputException in line 20: Missing input files for ru
5.5 years ago by Devon Ryan 105k
6
votes
1
reply
10k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
5.5 years ago by Devon Ryan 105k
1
vote
0
replies
4.7k
views
Comment: C: Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/c
5.5 years ago by Devon Ryan 105k
1
vote
1
reply
4.7k
views
Comment: C: Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/c
5.5 years ago by Devon Ryan 105k
1
vote
1
reply
1.9k
views
Comment: C: Software testing process failure: How can I match the already installed programs
5.5 years ago by Devon Ryan 105k
1
vote
1
reply
5.6k
views
Comment: C: Normalization of ATAC SEQ data for the proper deeptools heatmap
5.5 years ago by Devon Ryan 105k
2
votes
1
reply
5.6k
views
Answer: A: Normalization of ATAC SEQ data for the proper deeptools heatmap
5.5 years ago by Devon Ryan 105k
0
votes
0
replies
742
views
Answer: A: legal issues about running the analysis on the cloud
5.5 years ago by Devon Ryan 105k
2
votes
0
replies
6.0k
views
Answer: A: What is the difference between bed files from bigWig or bam, and bed files of na
5.5 years ago by Devon Ryan 105k
0
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0
replies
2.1k
views
Comment: C: About Mapping Efficiency of Bisulfite aligners
5.5 years ago by Devon Ryan 105k
0
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1
reply
2.1k
views
Comment: C: About Mapping Efficiency of Bisulfite aligners
5.5 years ago by Devon Ryan 105k
0
votes
0
replies
693
views
Comment: C: Methylation level assessment in published Bi-Seq data
5.5 years ago by Devon Ryan 105k
2
votes
1
reply
1.2k
views
Answer: A: Can I replace the single end sequenced sample with the failed pair end sequenced
5.5 years ago by Devon Ryan 105k
1
vote
1
reply
4.6k
views
Comment: C: If loop in snakemake
5.5 years ago by Devon Ryan 105k
7
votes
2
replies
44k
views
Answer: A: Running and Analyzing fastqc on multiple fastq files
updated 5.5 years ago by 45k • written 10.4 years ago by 105k
1
vote
0
replies
2.8k
views
Comment: C: MPI/multi-threading in salmon quasi-mapping
5.6 years ago by Devon Ryan 105k
1
vote
1
reply
1.6k
views
Comment: C: Mapping reads from a BAM file to a custom BED file.
5.6 years ago by Devon Ryan 105k
3
votes
0
replies
1.3k
views
Answer: A: How to covert RKPM into absolute quantification?
5.6 years ago by Devon Ryan 105k
1
vote
1
reply
2.4k
views
Comment: C: Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-s
5.6 years ago by Devon Ryan 105k
1
vote
1
reply
2.8k
views
Answer: A: MPI/multi-threading in salmon quasi-mapping
5.6 years ago by Devon Ryan 105k
0
votes
0
replies
1.3k
views
Answer: A: Interaction Design and continous variable In EdgeR
5.6 years ago by Devon Ryan 105k
2
votes
0
replies
2.0k
views
Comment: C: Snakemake and BBsplit.sh for filtrate human reads : memory management
5.6 years ago by Devon Ryan 105k
10,053 results • Page 5 of 202
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