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questions
1
vote
2
replies
5.0k
views
Xenome Star Aligner
rnaseq
updated 5.7 years ago by
Biostar
20 • written 10.9 years ago by
lkmklsmn
▴ 980
13
votes
5
replies
5.0k
views
Convert IMPUTE2 to VCF while keeping phase information
VCF
phasing
IMPUTE2
conversion
updated 2.6 years ago by
Ram
45k • written 9.3 years ago by
lkmklsmn
▴ 980
2
votes
3
replies
2.6k
views
Total RNA RNA-seq database
RNA-Seq
Extraction protocol
updated 6.9 years ago by
Biostar
20 • written 8.2 years ago by
lkmklsmn
▴ 980
3
votes
1
reply
4.2k
views
SOLID color-space RNAseq alignment
SOLID
RNAseq
fastq
alignment
color-space
updated 3.0 years ago by
Ram
45k • written 10.3 years ago by
lkmklsmn
▴ 980
3
votes
7
replies
7.2k
views
Any tools to quantify intron retention in RNAseq data?
R
RNA-seq
RNAseq
intron
retention
updated 3.5 years ago by
Ram
45k • written 10.9 years ago by
lkmklsmn
▴ 980
1
vote
1
reply
3.2k
views
Order of reads in FASTQ file
RNA-Seq
FASTQ
updated 8.0 years ago by
Brian Bushnell
20k • written 8.0 years ago by
lkmklsmn
▴ 980
3
votes
3
replies
2.9k
views
ribosomal RNA contamination
RNAseq
rRNA
contamination
updated 8.2 years ago by
Devon Ryan
105k • written 8.2 years ago by
lkmklsmn
▴ 980
2
votes
2
replies
4.5k
views
Ribosomal RNA in RNA-seq data
RNA-seq
Mapping
rRNA
Ribosomal
8.3 years ago by
lkmklsmn
▴ 980
10
votes
9
replies
13k
views
6 follow
How to convert IMPUTE2 to VCF format
IMPUTE2
VCF
conversion
updated 2.4 years ago by
Ram
45k • written 9.6 years ago by
lkmklsmn
▴ 980
12
votes
6
replies
13k
views
Gsea Plot
r
gene
enrichment
updated 8.6 years ago by
thomaskuilman
▴ 850 • written 11.0 years ago by
lkmklsmn
▴ 980
11
votes
1
reply
7.8k
views
IGV zoom into alignment
IGV
rna-seq
RNA-seq
updated 8.9 years ago by
igor
13k • written 8.9 years ago by
lkmklsmn
▴ 980
7
votes
1
reply
5.5k
views
Download ICGC gene expression data
gene-expression
ICGC
cancer
updated 24 months ago by
Ram
45k • written 9.0 years ago by
lkmklsmn
▴ 980
1
vote
1
reply
2.2k
views
Allele Definitions Between Dbsnp And Illumina
illumina
genotype
dbsnp
updated 9.1 years ago by
Biostar
20 • written 11.0 years ago by
lkmklsmn
▴ 980
4
votes
9
replies
4.7k
views
Problem Running Htseq
rnaseq
htseq
python
bam
alignment
updated 9.2 years ago by
Biostar
20 • written 11.4 years ago by
lkmklsmn
▴ 980
8
votes
11
replies
6.5k
views
8 follow
Aggregating Gene Expression Across Rows
rnaseq
gene
expression
updated 9.2 years ago by
oriolebaltimore
▴ 190 • written 11.0 years ago by
lkmklsmn
▴ 980
5
votes
8
replies
10.0k
views
6 follow
featureCounts isoform vs gene summarization
featureCounts
RNAseq
updated 3.1 years ago by
Ram
45k • written 10.4 years ago by
lkmklsmn
▴ 980
0
votes
0
replies
2.6k
views
Merging SNPs from multiple imputation runs
IMPUTE2
imputation
vcftools
9.6 years ago by
lkmklsmn
▴ 980
0
votes
0
replies
3.2k
views
Weights for dependent variable using limma voom
regression
limma
RNA-seq
updated 2.2 years ago by
Ram
45k • written 9.8 years ago by
lkmklsmn
▴ 980
1
vote
1
reply
3.6k
views
Convert STAR sjdb to gtf
STAR
RNAseq
splice junctions
gtf
RNA-Seq
updated 10.1 years ago by
Devon Ryan
105k • written 10.1 years ago by
lkmklsmn
▴ 980
0
votes
1
reply
2.6k
views
Affymetrix HuGeneST_1.0 masking probes
masking
Affymetrix
microarray
APT
updated 3.2 years ago by
Ram
45k • written 10.5 years ago by
lkmklsmn
▴ 980
0
votes
1
reply
1.9k
views
Association between number of exons and read density
Exons
Length
Reads
RNAseq
Normalization
updated 3.3 years ago by
Ram
45k • written 10.6 years ago by
lkmklsmn
▴ 980
1
vote
2
replies
7.4k
views
featureCounts duplicate counting
subread
RNAseq
Duplicates
featureCounts
updated 3.3 years ago by
Ram
45k • written 10.7 years ago by
lkmklsmn
▴ 980
1
vote
2
replies
6.7k
views
Convert paired end bam file into bed of fragments
namesorted
samtools
RNAseq
sort
updated 3.3 years ago by
Ram
45k • written 10.7 years ago by
lkmklsmn
▴ 980
0
votes
5
replies
3.9k
views
Intron level featureCounts gives segfault
Intron
Rsubread
featureCounts
updated 3.4 years ago by
Ram
45k • written 10.8 years ago by
lkmklsmn
▴ 980
4
votes
8
replies
8.2k
views
Customize IGV coverage track in R
RNA-Seq
R
IGV
coverage
updated 3.4 years ago by
Ram
45k • written 10.8 years ago by
lkmklsmn
▴ 980
2
votes
4
replies
4.8k
views
Remove duplicates in featurecounts
featureCounts
Picard
RNA-Seq
Rsubread
updated 3.5 years ago by
Ram
45k • written 10.8 years ago by
lkmklsmn
▴ 980
77
votes
11
replies
34k
views
9 follow
Star Or Tophat?
rnaseq
alignment
tophat
updated 3.9 years ago by
Ram
45k • written 11.2 years ago by
lkmklsmn
▴ 980
2
votes
1
reply
4.6k
views
Aligning Rnaseq To Both Mouse And Human
mouse
human
rnaseq
updated 10.9 years ago by
Charles Warden
8.3k • written 10.9 years ago by
lkmklsmn
▴ 980
3
votes
2
replies
8.3k
views
Ldheatmap In R
r
ld
heatmap
updated 11.0 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.6k • written 11.0 years ago by
lkmklsmn
▴ 980
25
votes
6
replies
22k
views
6 follow
Cytoscape Or Gephi?
cytoscape
visualization
updated 3.9 years ago by
Ram
45k • written 11.3 years ago by
lkmklsmn
▴ 980
1
vote
2
replies
7.0k
views
Star Segmentation Fault
rnaseq
11.1 years ago by
lkmklsmn
▴ 980
15
votes
7
replies
20k
views
Multi-Panel Heatmaps In R
r
heatmap
updated 11.3 years ago by
seidel
11k • written 11.3 years ago by
lkmklsmn
▴ 980
3
votes
5
replies
3.7k
views
Fast Rna-Seq Exon Count Calculation
exon
counts
rna-seq
htseq
updated 11.4 years ago by
Devon Ryan
105k • written 11.4 years ago by
lkmklsmn
▴ 980
5
votes
2
replies
2.8k
views
Different Values Between Affymetrix Power Tools And Affy R Package
affymetrix
affymetrix
r
updated 11.4 years ago by
Biostar
20 • written 11.7 years ago by
lkmklsmn
▴ 980
2
votes
4
replies
6.3k
views
Where To Find 'The Official Cdf File' For The Affymetrix Hugene 2.0St Array
microarray
affymetrix
r
updated 11.8 years ago by
Pascal
▴ 250 • written 11.8 years ago by
lkmklsmn
▴ 980
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