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3
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0
replies
1.2k
views
Comment: Comment: Efficient querying of genomic reference databases with gget
9 months ago by pomodoro_sinensis ▴ 90
2
votes
1
reply
401
views
How are intron-containing transcripts captured in snRNA-seq?
snRNA-seq
updated 13 months ago by 11k • written 13 months ago by ▴ 90
0
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0
replies
333
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Adding counts from two barcodes in anndata object
scRNA-seq anndata
14 months ago by pomodoro_sinensis ▴ 90
0
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0
replies
248
views
What is a read generation model?
reads
15 months ago by pomodoro_sinensis ▴ 90
6
votes
1
reply
3.2k
views
Gzip output of fasterq-dump
SRA fasterq-dump
updated 16 months ago by 14k • written 16 months ago by ▴ 90
0
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0
replies
525
views
Comment: Comment: GEO scRNA-seq entry with cell type information?
17 months ago by pomodoro_sinensis ▴ 90
0
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2
replies
525
views
GEO scRNA-seq entry with cell type information?
scRNA-seq
17 months ago by pomodoro_sinensis ▴ 90
0
votes
1
reply
1.1k
views
Does SCVI automatically use highly variable genes?
scRNA-seq SCVI Highly variable genes
updated 17 months ago by • 0 • written 2.1 years ago by ▴ 90
0
votes
1
reply
495
views
What is each sample?
scRNA-seq
2.0 years ago by pomodoro_sinensis ▴ 90
0
votes
1
reply
561
views
Comment: C: Where can I find the raw data for this GSE entry?
2.1 years ago by pomodoro_sinensis ▴ 90
0
votes
3
replies
561
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Where can I find the raw data for this GSE entry?
GSE
updated 12 hours ago by 38k • written 2.1 years ago by ▴ 90
0
votes
1
reply
1.2k
views
Comment: C: How to add "transcript" feature to a gtf file?
2.1 years ago by pomodoro_sinensis ▴ 90
0
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0
replies
1.2k
views
Comment: C: How to add "transcript" feature to a gtf file?
2.1 years ago by pomodoro_sinensis ▴ 90
0
votes
1
reply
1.2k
views
Comment: C: How to add "transcript" feature to a gtf file?
2.1 years ago by pomodoro_sinensis ▴ 90
8
votes
7
replies
1.2k
views
How to add "transcript" feature to a gtf file?
gtf
2.1 years ago by pomodoro_sinensis ▴ 90
1
vote
2
replies
480
views
What gene mouse IDs are these?
gene mouse ID
updated 2.2 years ago by 70k • written 2.2 years ago by ▴ 90
1
vote
7
replies
1.7k
views
Is anybody experiencing problems downloading from the SRA?
SRA
updated 18 hours ago by 38k • written 2.3 years ago by ▴ 90
0
votes
0
replies
787
views
Comment: C: Unable to find this E coli genome
2.2 years ago by pomodoro_sinensis ▴ 90
0
votes
1
reply
787
views
Comment: C: Unable to find this E coli genome
2.2 years ago by pomodoro_sinensis ▴ 90
0
votes
0
replies
787
views
Comment: C: Unable to find this E coli genome
2.2 years ago by pomodoro_sinensis ▴ 90
0
votes
2
replies
787
views
Comment: C: Unable to find this E coli genome
2.2 years ago by pomodoro_sinensis ▴ 90
0
votes
6
replies
787
views
Unable to find this E coli genome
E coli genome ensembl bacteria download
updated 2.2 years ago by ★ 23k • written 2.2 years ago by ▴ 90
0
votes
0
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694
views
Comment: C: How to choose the appropriate gtf file?
2.2 years ago by pomodoro_sinensis ▴ 90
1
vote
2
replies
694
views
How to choose the appropriate gtf file?
gtf genome human
2.2 years ago by pomodoro_sinensis ▴ 90
0
votes
0
replies
477
views
How do you add up the results from two barcodes in an anndata object?
scRNA-seq anndata
2.3 years ago by pomodoro_sinensis ▴ 90
0
votes
0
replies
1.7k
views
Comment: C: Is anybody experiencing problems downloading from the SRA?
2.3 years ago by pomodoro_sinensis ▴ 90
0
votes
0
replies
1.7k
views
Comment: C: Is anybody experiencing problems downloading from the SRA?
2.3 years ago by pomodoro_sinensis ▴ 90
0
votes
1
reply
805
views
Comment: C: How can I find the position of a sequence in a fastq file
2.4 years ago by pomodoro_sinensis ▴ 90
0
votes
1
reply
805
views
Comment: C: How can I find the position of a sequence in a fastq file
2.4 years ago by pomodoro_sinensis ▴ 90
0
votes
1
reply
805
views
Comment: C: How can I find the position of a sequence in a fastq file
2.4 years ago by pomodoro_sinensis ▴ 90
0
votes
7
replies
805
views
How can I find the position of a sequence in a fastq file
fastq sequence position find
updated 2.4 years ago by 127k • written 2.4 years ago by ▴ 90
0
votes
0
replies
1.2k
views
Comment: C: Why does this 10x scRNA-seq data set have one read instead of two reads?
2.4 years ago by pomodoro_sinensis ▴ 90
0
votes
0
replies
1.2k
views
Comment: C: Why does this 10x scRNA-seq data set have one read instead of two reads?
2.4 years ago by pomodoro_sinensis ▴ 90
0
votes
0
replies
1.2k
views
Comment: C: Why does this 10x scRNA-seq data set have one read instead of two reads?
2.4 years ago by pomodoro_sinensis ▴ 90
0
votes
2
replies
1.2k
views
Comment: C: Why does this 10x scRNA-seq data set have one read instead of two reads?
2.4 years ago by pomodoro_sinensis ▴ 90
1
vote
8
replies
1.2k
views
Why does this 10x scRNA-seq data set have one read instead of two reads?
10x scRNA-seq reads SRA
updated 2.4 years ago by 127k • written 2.4 years ago by ▴ 90
0
votes
1
reply
1.5k
views
Comment: C: Problems with fastq-dump generating a single fastq file
2.4 years ago by pomodoro_sinensis ▴ 90
0
votes
1
reply
1.5k
views
Comment: C: Problems with fastq-dump generating a single fastq file
2.4 years ago by pomodoro_sinensis ▴ 90
0
votes
1
reply
1.5k
views
Comment: C: Problems with fastq-dump generating a single fastq file
2.4 years ago by pomodoro_sinensis ▴ 90
0
votes
1
reply
1.5k
views
Comment: C: Problems with fastq-dump generating a single fastq file
2.4 years ago by pomodoro_sinensis ▴ 90
1
vote
11
replies
1.5k
views
Problems with fastq-dump generating a single fastq file
fastq-dump pair-ended fastq
updated 2.4 years ago by 127k • written 2.4 years ago by ▴ 90
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