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3
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0
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804
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Tutorial: How to calculate partial correlation controlling cancer types
CRISPR biology correlation computational bioinformatics
3 months ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
846
views
Tutorial: PCA analysis on TCGA bulk RNAseq data
R RNAseq TCGA
7 months ago by Ming Tommy Tang ★ 4.7k
1
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1
reply
1.4k
views
Answer: Answer: Error from Using FindVariableFeatures Function in Seurat Package
updated 8 months ago by 153k • written 8 months ago by ★ 4.7k
0
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0
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791
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Comment: Comment: Understanding how to deal with Brain snRNA-seq data
8 months ago by Ming Tommy Tang ★ 4.7k
6
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0
replies
1.0k
views
Tutorial: Step by step tutorial to replicate a genomics figure
R Unix ChIP-seq bioconductor
8 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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932
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Answer: Answer: Integrating TCGA tumor RNAseq data with normal tissue samples from other sources
10 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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747
views
Answer: Answer: Differential binding analysis between different TFs
10 months ago by Ming Tommy Tang ★ 4.7k
2
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1
reply
885
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Comment: Comment: Selecting DEGs for gene ontology using clusterprofiler and DESeq2
10 months ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
790
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Tutorial: How CCA alignment and cell label transfer work in Seurat
biology computational seurat bioinformatics scRNAseq
10 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
2.3k
views
Comment: Comment: How to determine whether it is 10x data
10 months ago by Ming Tommy Tang ★ 4.7k
1
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1
reply
1.2k
views
Comment: Comment: Gene set enrichment analysis gives a lot of "significant pathways"
11 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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1.7k
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Answer: Answer: GEOquery issue
11 months ago by Ming Tommy Tang ★ 4.7k
3
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0
replies
432
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Blog: How Seurat PCA projection, KNN and MNN for label transfer work
R RNA-seq scRNA-seq PCA
updated 11 months ago by 45k • written 11 months ago by ★ 4.7k
0
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1
reply
763
views
Answer: Answer: How methylation is annotated, and what is the number behind the cg.... annotatio
11 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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670
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Comment: Comment: Multi OMICS analysis
11 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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1.9k
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Comment: Comment: Permutations FGSEA
11 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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938
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Comment: Comment: Cluster regions based on similar/dissimilar ChIP-seq signal profile across the w
11 months ago by Ming Tommy Tang ★ 4.7k
2
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1
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1.1k
views
Answer: Answer: What is wrong with my scripts?
11 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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1.3k
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Comment: Comment: Using DNA Methylation Data as Input for ChromHMM
11 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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1.1k
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Comment: Comment: NA Values Appearing After Log Transformation of array Data
12 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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1.2k
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Comment: Comment: GSEA single cell
12 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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1.1k
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Answer: Answer: NA Values Appearing After Log Transformation of array Data
12 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
1.0k
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Comment: Comment: Extracting normalized counts from RDS (Seurat) file
12 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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695
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Answer: Answer: Pathway analysis for mouse gene sets
12 months ago by Ming Tommy Tang ★ 4.7k
2
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1
reply
937
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Answer: Answer: How can I get the list of all human ensembl transcript ids?
12 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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2.0k
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Comment: Comment: which bed file should be used for deeptools computeMatrix
13 months ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
1.5k
views
Tutorial: How to install R and Rstudio on macOS with M3 chip
rstats computational-biology
updated 13 months ago by 45k • written 13 months ago by ★ 4.7k
0
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0
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3.0k
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Comment: Comment: why R scripts are preferred to biopython for RNA-Seq analyses?
13 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
2.6k
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Comment: Comment: Parallel processing of bioinformatics pipeline - running deepbgc, bagel, and ant
13 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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776
views
Answer: Answer: Unable to Upload a .txt file into GSEA
13 months ago by Ming Tommy Tang ★ 4.7k
6
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0
replies
1.4k
views
Tutorial: 6 tips to stay up to date for bioinformatics
bioinformatics computational-biology
updated 13 months ago by 45k • written 13 months ago by ★ 4.7k
3
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0
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988
views
Tutorial: Tutorial: How to configure terminal on macOS for bioinformatics
terminal macOS unix
updated 13 months ago by 45k • written 13 months ago by ★ 4.7k
5
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0
replies
1.4k
views
Tutorial: 10 books got me started on bioinformatics
bioinformatics computational-biology
updated 13 months ago by 45k • written 13 months ago by ★ 4.7k
1
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0
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984
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Comment: Comment: Tools for estimating telomere length
14 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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2.0k
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Comment: Comment: Pseudobulk for scRNA-seq: sum or mean?
14 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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986
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Answer: Answer: How can we identify if there are neighboring genes or overlapping promoter regio
14 months ago by Ming Tommy Tang ★ 4.7k
2
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0
replies
1.0k
views
Answer: Answer: temp directory as output in snakemake
14 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
1.7k
views
Comment: Comment: Seeking Tutorial for Downloading TCGA Data with TCGAbiolinks and Converting to T
15 months ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
1.9k
views
Comment: Comment: Creating GCT files
15 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
652
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Comment: Comment: ChIP-seq SICER
15 months ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
8.3k
views
Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
updated 15 months ago by 45k • written 15 months ago by ★ 4.7k
0
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0
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2.0k
views
Comment: Comment: Slot to pull data from for DoHeatmap
15 months ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
1.3k
views
Answer: Answer: Example human WGS fastq data
15 months ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
1.7k
views
Answer: Answer: Download SRR by parallele and fastq dump with a wired problem
15 months ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
2.7k
views
Comment: Comment: Alignment tool for very short reads (25bp)
15 months ago by Ming Tommy Tang ★ 4.7k
2
votes
0
replies
996
views
Tutorial: Seurat Object Explained: Beginner's Guide and Demo
scRNA-seq Seurat single-cell
updated 15 months ago by 45k • written 15 months ago by ★ 4.7k
2
votes
0
replies
1.8k
views
Answer: Answer: GSEA with fgsea package and using stat from DESeq2 output - what to do with NA p
15 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
809
views
Comment: Comment: How to find column names for ENCODE ATAC-seq data?
15 months ago by Ming Tommy Tang ★ 4.7k
6
votes
1
reply
1.3k
views
Tutorial: How to organize a computational biology project
file-organization
updated 15 months ago by ★ 30k • written 15 months ago by ★ 4.7k
2
votes
1
reply
1.3k
views
Comment: Comment: chIP-seq vs ATACseq analysis
15 months ago by Ming Tommy Tang ★ 4.7k
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