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3.6k
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Answer: A: SAM File target extraction
updated 5.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
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1
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14k
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Comment: C: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
updated 6.0 years ago by 45k • written 11.4 years ago by ★ 4.7k
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9.1k
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Comment: C: Ucsc Mysql Query
updated 6.0 years ago by 45k • written 11.1 years ago by ★ 4.7k
5
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4
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4.8k
views
normalize ChIP-seq data by copy number variation
ChIP-Seq CNV
updated 2.6 years ago by 45k • written 10.4 years ago by ★ 4.7k
1
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1
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14k
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Comment: C: Interesting bioinformatics blogs (2017 edition)
6.3 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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1.1k
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Comment: C: No called peaks from macse 2 and the alignment rate 90%
6.5 years ago by Ming Tommy Tang ★ 4.7k
2
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3
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2.8k
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Any tools to predict non-coding driver mutations
WGS
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 4.7k
0
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1
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5.7k
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Comment: C: what tools to visualize structural variants VCF files?
updated 7.0 years ago by 45k • written 9.6 years ago by ★ 4.7k
1
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0
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29k
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Comment: C: Disease Associated Snps
updated 7.0 years ago by 45k • written 10.9 years ago by ★ 4.7k
10
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3
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7.6k
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convert SNP calls to amino acid change
snp amino-acid
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 4.7k
0
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0
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3.4k
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Comment: C: bedops -u does not work properly
7.7 years ago by Ming Tommy Tang ★ 4.7k
5
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11
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3.4k
views
bedops -u does not work properly
bedops bed intersect
updated 4.4 years ago by ★ 1.3k • written 7.7 years ago by ★ 4.7k
0
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0
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3.4k
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Comment: C: bedops -u does not work properly
7.7 years ago by Ming Tommy Tang ★ 4.7k
0
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2
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3.4k
views
Comment: C: bedops -u does not work properly
7.7 years ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
3.4k
views
Comment: C: bedops -u does not work properly
7.7 years ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
3.4k
views
Comment: C: bedops -u does not work properly
7.7 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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3.5k
views
Comment: C: Why do I get a weird copy number in the tumour?
7.7 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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6.6k
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Answer: A: How to convert bam-readcount output to BED-VAF format
7.9 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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4.8k
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Comment: C: indel preprocessing prior to bam-readcount
7.9 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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6.6k
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Comment: C: How to convert bam-readcount output to BED-VAF format
7.9 years ago by Ming Tommy Tang ★ 4.7k
1
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2
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2.7k
views
sample order of the freebayes vcf output
WES freebayes vcf
8.1 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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12k
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Comment: C: Peak calling macs vs Homer
8.1 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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2.7k
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Comment: C: sample order of the freebayes vcf output
8.1 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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2.3k
views
Comment: C: Any advanced and really structured course on Python language or MySql or R or Un
8.1 years ago by Ming Tommy Tang ★ 4.7k
1
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1
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2.8k
views
Comment: C: Download ENCODE Project BED files using REST API
8.2 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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4.9k
views
Answer: A: Downloading genomic interval for hg38
8.2 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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2.1k
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Answer: A: bulk download in ENCODE
8.2 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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2.2k
views
Comment: C: ChIP-seq analysis - More peaks in IP samples without activating the TF
8.2 years ago by Ming Tommy Tang ★ 4.7k
2
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0
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2.2k
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Answer: A: How to use the qvalue function for multiple testing?
8.2 years ago by Ming Tommy Tang ★ 4.7k
5
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0
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50k
views
Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
8.3 years ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
51k
views
Comment: Comment: When and why is bwa aln better then bwa mem?
updated 4.5 years ago by 45k • written 8.3 years ago by ★ 4.7k
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0
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1.5k
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Answer: A: Good Pipeline for ChIPexo
8.3 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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5.5k
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Comment: C: Peak calling for broad histone-modification regions
8.3 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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6.4k
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Comment: C: Software for Tree Visualization
8.3 years ago by Ming Tommy Tang ★ 4.7k
0
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1
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6.4k
views
Comment: C: Software for Tree Visualization
8.3 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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4.4k
views
Comment: C: Seeking private tutor to learn RNA/ChIP-Seq data analysis
8.3 years ago by Ming Tommy Tang ★ 4.7k
7
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3
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4.4k
views
Answer: A: Seeking private tutor to learn RNA/ChIP-Seq data analysis
8.4 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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4.4k
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Answer: A: Depth of coverage in Bam file does not match depth in VCF file
8.4 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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18k
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Comment: C: TCGA/Broad Institute CNV Files Segment Mean
8.5 years ago by Ming Tommy Tang ★ 4.7k
3
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5
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12k
views
RNAseq heatmap.2 log2FC clustering
heatmap RNA-Seq
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 4.7k
1
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0
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9.7k
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Comment: C: EaSeq - Interactive ChIP-seq analysis and visualization (for Windows)
8.8 years ago by Ming Tommy Tang ★ 4.7k
0
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1
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43k
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Comment: C: question about GSEA
8.8 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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6.1k
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Comment: C: p-value and adjusted p-value exactly the same
8.8 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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2.4k
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Comment: C: Has anyone had experience with Q for ChIP-seq peak calling?
8.8 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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2.6k
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Answer: A: regulation of gene expression of a set of genes
8.8 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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132k
views
Comment: C: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
8.8 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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5.2k
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Answer: A: TPM and RPKM normalization from counts dataframe
8.8 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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2.8k
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Answer: A: For RNA seq data analysis
8.8 years ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
8.7k
views
Answer: A: GSEA preranked list, values with same rank?
8.8 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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3.8k
views
Comment: C: Only one cluster in multiple tumor phylogeny samples
8.9 years ago by Ming Tommy Tang ★ 4.7k
477 results • Page 5 of 10
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