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0
votes
2
replies
654
views
are there any downloadable database for tissue specific DMRs?
t-DMR
updated 17 months ago by ▴ 80 • written 21 months ago by ▴ 60
0
votes
0
replies
477
views
annotating regions with annotate Peak and ucsc refGene gives different answers in some cases
gene_names r ngs annotate
20 months ago by pt.taklifi ▴ 60
0
votes
0
replies
643
views
Comment: Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
22 months ago by pt.taklifi ▴ 60
1
vote
4
replies
643
views
gene expression for a specific gene across for multiple cancer types in TCGA datasets
gene_expression TCGA RTCAG
22 months ago by pt.taklifi ▴ 60
0
votes
0
replies
643
views
Comment: Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
22 months ago by pt.taklifi ▴ 60
0
votes
1
reply
905
views
Comment: Comment: ATACseq batch effect coupled with biological effect
22 months ago by pt.taklifi ▴ 60
1
vote
3
replies
905
views
ATACseq batch effect coupled with biological effect
ATACseq batch_effect
updated 22 months ago by ▴ 220 • written 22 months ago by ▴ 60
0
votes
0
replies
3.1k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
22 months ago by pt.taklifi ▴ 60
0
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1
reply
3.1k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
22 months ago by pt.taklifi ▴ 60
0
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0
replies
3.1k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
22 months ago by pt.taklifi ▴ 60
5
votes
5
replies
3.1k
views
How to create SAF from text file for FeatureCounts
ATACseq featureCounts
22 months ago by pt.taklifi ▴ 60
0
votes
0
replies
1.8k
views
Comment: Comment: get count matrix from bam files
23 months ago by pt.taklifi ▴ 60
2
votes
2
replies
1.8k
views
get count matrix from bam files
count ATACseq sequencing bam paired_end
23 months ago by pt.taklifi ▴ 60
0
votes
0
replies
903
views
how to get feature importance after SVM
high_dimensional SVM R
23 months ago by pt.taklifi ▴ 60
0
votes
0
replies
1.0k
views
Comment: Comment: How to implement k fold cv after randomForest
23 months ago by pt.taklifi ▴ 60
1
vote
2
replies
1.0k
views
How to implement k fold cv after randomForest
k_fold_cv R randomForest
23 months ago by pt.taklifi ▴ 60
2
votes
3
replies
497
views
How to remove repeats on galaxy
alignment repeats galaxy
updated 2.0 years ago by 20 • written 2.2 years ago by ▴ 60
0
votes
1
reply
615
views
Comment: C: how to select features for high dimension data?
2.0 years ago by pt.taklifi ▴ 60
1
vote
1
reply
476
views
how to determine low quality variants in vcf files
vcf variant_depth
2.0 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.6k
views
Comment: C: Merge bigwig Files with different intervals
2.1 years ago by pt.taklifi ▴ 60
1
vote
9
replies
1.6k
views
Merge bigwig Files with different intervals
bigwig Merge
2.1 years ago by pt.taklifi ▴ 60
2
votes
1
reply
1.2k
views
bedGraphToBigWig error : Expecting at least 3 words line 1 of chrom.sizes. got 2
bigwig bedGraph
updated 2.1 years ago by 70k • written 2.1 years ago by ▴ 60
0
votes
1
reply
1.6k
views
Comment: C: Merge bigwig Files with different intervals
2.1 years ago by pt.taklifi ▴ 60
4
votes
6
replies
4.4k
views
how to remove duplicates with picard
alignment deduplication
updated 2.1 years ago by 153k • written 2.1 years ago by ▴ 60
0
votes
0
replies
4.4k
views
Comment: C: how to remove duplicates with picard
2.1 years ago by pt.taklifi ▴ 60
0
votes
0
replies
4.4k
views
Comment: C: how to remove duplicates with picard
2.1 years ago by pt.taklifi ▴ 60
2
votes
1
reply
618
views
samtools index error
alignment
updated 2.1 years ago by 153k • written 2.1 years ago by ▴ 60
8
votes
3
replies
615
views
how to select features for high dimension data?
machine_learning high_dimension
updated 2.1 years ago by ★ 23k • written 2.1 years ago by ▴ 60
7
votes
6
replies
1.4k
views
nohup with while loop
bash loop SRAtoolkit
2.1 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.4k
views
Comment: C: nohup with while loop
2.1 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.4k
views
Comment: C: nohup with while loop
2.1 years ago by pt.taklifi ▴ 60
0
votes
0
replies
573
views
Comment: C: error with bowtie2 alignment
2.1 years ago by pt.taklifi ▴ 60
0
votes
0
replies
573
views
Comment: C: error with bowtie2 alignment
2.1 years ago by pt.taklifi ▴ 60
0
votes
1
reply
573
views
Comment: C: error with bowtie2 alignment
2.1 years ago by pt.taklifi ▴ 60
2
votes
6
replies
573
views
error with bowtie2 alignment
alignment error sequencing
2.1 years ago by pt.taklifi ▴ 60
0
votes
1
reply
862
views
Comment: C: bcftools variant calling
2.1 years ago by pt.taklifi ▴ 60
0
votes
0
replies
485
views
Comment: C: sum of values in a column
2.1 years ago by pt.taklifi ▴ 60
0
votes
1
reply
485
views
Comment: C: sum of values in a column
2.1 years ago by pt.taklifi ▴ 60
4
votes
5
replies
485
views
sum of values in a column
r
2.1 years ago by pt.taklifi ▴ 60
3
votes
3
replies
938
views
remove mitochondrial reads using Bowtie2
alignment
updated 2.2 years ago by ★ 5.0k • written 2.2 years ago by ▴ 60
0
votes
1
reply
873
views
Comment: C: bigwigs to reads in peaks
2.2 years ago by pt.taklifi ▴ 60
0
votes
1
reply
873
views
Comment: C: bigwigs to reads in peaks
2.2 years ago by pt.taklifi ▴ 60
0
votes
5
replies
873
views
bigwigs to reads in peaks
R atacseq
2.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
4.4k
views
Comment: C: how to resolve "command not found " error on macOS
2.2 years ago by pt.taklifi ▴ 60
0
votes
1
reply
4.4k
views
Comment: C: how to resolve "command not found " error on macOS
2.2 years ago by pt.taklifi ▴ 60
0
votes
1
reply
4.4k
views
Comment: C: how to resolve "command not found " error on macOS
2.2 years ago by pt.taklifi ▴ 60
3
votes
7
replies
4.4k
views
how to resolve "command not found " error on macOS
command_line macOs installation
2.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
337
views
matched tumor and cfDNA data sets
variant_calls sequencing
2.3 years ago by pt.taklifi ▴ 60
2
votes
6
replies
896
views
overlap regions within a file
overlap R ATAC_seq
2.3 years ago by pt.taklifi ▴ 60
0
votes
0
replies
896
views
Comment: C: overlap regions within a file
2.3 years ago by pt.taklifi ▴ 60
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