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557
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Comment: Comment: CTCF binding sites
6 weeks ago by pt.taklifi ▴ 70
4
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2
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557
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CTCF binding sites
genome GENCODE annotations
6 weeks ago by pt.taklifi ▴ 70
3
votes
2
replies
1.9k
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is there a tool to recover corrupted fastq files
fastq short-read
updated 16 months ago by • 0 • written 19 months ago by ▴ 70
3
votes
5
replies
1.3k
views
Tutorial for analyzing WGBS data
NGS methylseq WGBS
18 months ago by pt.taklifi ▴ 70
0
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0
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1.3k
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Comment: Comment: Tutorial for analyzing WGBS data
18 months ago by pt.taklifi ▴ 70
0
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0
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1.3k
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Comment: Comment: Tutorial for analyzing WGBS data
18 months ago by pt.taklifi ▴ 70
0
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0
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1.3k
views
Comment: Comment: Tutorial for analyzing WGBS data
18 months ago by pt.taklifi ▴ 70
0
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2
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1.2k
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are there any downloadable database for tissue specific DMRs?
t-DMR
updated 4.0 years ago by ▴ 80 • written 4.2 years ago by ▴ 70
0
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0
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1.1k
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annotating regions with annotate Peak and ucsc refGene gives different answers in some cases
gene_names r ngs annotate
4.2 years ago by pt.taklifi ▴ 70
0
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0
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1.5k
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Comment: Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
4.3 years ago by pt.taklifi ▴ 70
1
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4
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1.5k
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gene expression for a specific gene across for multiple cancer types in TCGA datasets
gene_expression TCGA RTCAG
4.3 years ago by pt.taklifi ▴ 70
0
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0
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1.5k
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Comment: Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
4.3 years ago by pt.taklifi ▴ 70
0
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1
reply
1.9k
views
Comment: Comment: ATACseq batch effect coupled with biological effect
4.4 years ago by pt.taklifi ▴ 70
1
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3
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1.9k
views
ATACseq batch effect coupled with biological effect
batch-effect ATAC-seq
updated 2.3 years ago by 45k • written 4.4 years ago by ▴ 70
0
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0
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7.5k
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Comment: Comment: How to create SAF from text file for FeatureCounts
4.4 years ago by pt.taklifi ▴ 70
0
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1
reply
7.5k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
4.4 years ago by pt.taklifi ▴ 70
0
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0
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7.5k
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Comment: Comment: How to create SAF from text file for FeatureCounts
4.4 years ago by pt.taklifi ▴ 70
7
votes
6
replies
7.5k
views
How to create SAF from text file for FeatureCounts
featureCounts ATAC-seq
updated 14 months ago by ▴ 80 • written 4.4 years ago by ▴ 70
0
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0
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3.4k
views
Comment: Comment: get count matrix from bam files
4.4 years ago by pt.taklifi ▴ 70
2
votes
2
replies
3.4k
views
get count matrix from bam files
bam ATAC-seq
updated 2.3 years ago by 45k • written 4.4 years ago by ▴ 70
0
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0
replies
1.9k
views
how to get feature importance after SVM
high_dimensional SVM R
4.4 years ago by pt.taklifi ▴ 70
0
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0
replies
1.8k
views
Comment: Comment: How to implement k fold cv after randomForest
4.5 years ago by pt.taklifi ▴ 70
1
vote
2
replies
1.8k
views
How to implement k fold cv after randomForest
k_fold_cv R randomForest
4.5 years ago by pt.taklifi ▴ 70
2
votes
3
replies
1.0k
views
How to remove repeats on galaxy
alignment repeats galaxy
updated 4.5 years ago by 20 • written 4.7 years ago by ▴ 70
0
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1
reply
1.5k
views
Comment: C: how to select features for high dimension data?
4.6 years ago by pt.taklifi ▴ 70
1
vote
1
reply
1.1k
views
how to determine low quality variants in vcf files
vcf variant_depth
4.6 years ago by pt.taklifi ▴ 70
0
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0
replies
4.0k
views
Comment: C: Merge bigwig Files with different intervals
4.6 years ago by pt.taklifi ▴ 70
1
vote
9
replies
4.0k
views
Merge bigwig Files with different intervals
bigwig Merge
4.6 years ago by pt.taklifi ▴ 70
2
votes
1
reply
2.8k
views
bedGraphToBigWig error : Expecting at least 3 words line 1 of chrom.sizes. got 2
bigwig bedGraph
updated 4.6 years ago by 89k • written 4.6 years ago by ▴ 70
0
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1
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4.0k
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Comment: C: Merge bigwig Files with different intervals
4.6 years ago by pt.taklifi ▴ 70
4
votes
6
replies
9.3k
views
how to remove duplicates with picard
alignment deduplication
updated 4.6 years ago by 166k • written 4.6 years ago by ▴ 70
0
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0
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9.3k
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Comment: C: how to remove duplicates with picard
4.6 years ago by pt.taklifi ▴ 70
0
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0
replies
9.3k
views
Comment: C: how to remove duplicates with picard
4.6 years ago by pt.taklifi ▴ 70
2
votes
1
reply
1.7k
views
samtools index error
alignment
updated 4.6 years ago by 166k • written 4.6 years ago by ▴ 70
8
votes
3
replies
1.5k
views
how to select features for high dimension data?
machine-learning
updated 22 months ago by 45k • written 4.6 years ago by ▴ 70
7
votes
6
replies
2.5k
views
nohup with while loop
bash loop SRAtoolkit
4.6 years ago by pt.taklifi ▴ 70
0
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0
replies
2.5k
views
Comment: C: nohup with while loop
4.6 years ago by pt.taklifi ▴ 70
0
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0
replies
2.5k
views
Comment: C: nohup with while loop
4.6 years ago by pt.taklifi ▴ 70
0
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0
replies
1.5k
views
Comment: C: error with bowtie2 alignment
4.6 years ago by pt.taklifi ▴ 70
0
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0
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1.5k
views
Comment: C: error with bowtie2 alignment
4.6 years ago by pt.taklifi ▴ 70
0
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1
reply
1.5k
views
Comment: C: error with bowtie2 alignment
4.6 years ago by pt.taklifi ▴ 70
2
votes
6
replies
1.5k
views
error with bowtie2 alignment
alignment error sequencing
4.6 years ago by pt.taklifi ▴ 70
0
votes
1
reply
2.0k
views
Comment: C: bcftools variant calling
4.6 years ago by pt.taklifi ▴ 70
0
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0
replies
1.2k
views
Comment: C: sum of values in a column
4.7 years ago by pt.taklifi ▴ 70
0
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1
reply
1.2k
views
Comment: C: sum of values in a column
4.7 years ago by pt.taklifi ▴ 70
4
votes
5
replies
1.2k
views
sum of values in a column
r
4.7 years ago by pt.taklifi ▴ 70
3
votes
3
replies
2.0k
views
remove mitochondrial reads using Bowtie2
alignment
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by ▴ 70
0
votes
1
reply
2.0k
views
Comment: C: bigwigs to reads in peaks
4.7 years ago by pt.taklifi ▴ 70
0
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1
reply
2.0k
views
Comment: C: bigwigs to reads in peaks
4.7 years ago by pt.taklifi ▴ 70
0
votes
5
replies
2.0k
views
bigwigs to reads in peaks
R atac-seq
updated 2.3 years ago by 45k • written 4.7 years ago by ▴ 70
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