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316
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Filter our reads in sam file less than specific length
sam reads
updated 8 months ago by 153k • written 8 months ago by ▴ 60
0
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0
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650
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Comment: Comment: JGI Seal ArrayIndexOutOfBoundsException
14 months ago by daewowo ▴ 60
0
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0
replies
650
views
Comment: Comment: JGI Seal ArrayIndexOutOfBoundsException
14 months ago by daewowo ▴ 60
1
vote
3
replies
650
views
JGI Seal ArrayIndexOutOfBoundsException
alignment filtering Seal genome
14 months ago by daewowo ▴ 60
0
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0
replies
316
views
NCBI STAT Taxonomy and Krona percentages different
NCBI STAT Krona Taxonomy
15 months ago by daewowo ▴ 60
2
votes
1
reply
388
views
Bowtie2 CIGAR value of '*' makes mapping quality in SAM file difficult to interpret
sam bowtie2
updated 15 months ago by 71k • written 15 months ago by ▴ 60
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0
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276
views
Magic blast -score parameter
magicblast
15 months ago by daewowo ▴ 60
1
vote
2
replies
399
views
Bowtie2 scoring translated to number of non matching nt allowed
bowtie2
15 months ago by daewowo ▴ 60
0
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0
replies
399
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Comment: Comment: Bowtie2 scoring translated to number of non matching nt allowed
15 months ago by daewowo ▴ 60
2
votes
1
reply
407
views
BBSplit ambiguous dataset analysis
bbmap bbsplit
updated 15 months ago by 127k • written 15 months ago by ▴ 60
2
votes
3
replies
988
views
Extract human, mouse and pig aligned reads from .bam file alignment to conactenated genomes
Extract ConcatRef bam
15 months ago by daewowo ▴ 60
1
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0
replies
988
views
Answer: Answer: Extract human, mouse and pig aligned reads from .bam file alignment to conactena
15 months ago by daewowo ▴ 60
0
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0
replies
988
views
Comment: Comment: Extract human, mouse and pig aligned reads from .bam file alignment to conactena
16 months ago by daewowo ▴ 60
9
votes
9
replies
1.8k
views
Bam file depth of coverage and statstics
Bam
16 months ago by daewowo ▴ 60
1
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0
replies
1.8k
views
Answer: Answer: Bam file depth of coverage and statstics
16 months ago by daewowo ▴ 60
0
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0
replies
1.8k
views
Comment: Comment: Bam file depth of coverage and statstics
16 months ago by daewowo ▴ 60
0
votes
2
replies
3.3k
views
Comment: Comment: Generate GTF file
16 months ago by daewowo ▴ 60
0
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1
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1.8k
views
Comment: Comment: Bam file depth of coverage and statstics
16 months ago by daewowo ▴ 60
1
vote
4
replies
3.3k
views
Generate GTF file
GTF
updated 16 months ago by 4.6k • written 16 months ago by ▴ 60
0
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0
replies
109k
views
Comment: Comment: The Biostar Handbook. A bioinformatics e-book for beginners.
16 months ago by daewowo ▴ 60
2
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1
reply
1.8k
views
Comment: Comment: Bam file depth of coverage and statstics
17 months ago by daewowo ▴ 60
0
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0
replies
1.8k
views
Comment: Comment: Bam file depth of coverage and statstics
17 months ago by daewowo ▴ 60
4
votes
6
replies
2.0k
views
How to download NCBI fastq data to local machine where access type is "Use Cloud Data Delivery"
delivery NCBI cloud
updated 20 months ago by 127k • written 20 months ago by ▴ 60
0
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0
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2.0k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
20 months ago by daewowo ▴ 60
0
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1
reply
2.0k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
20 months ago by daewowo ▴ 60
0
votes
1
reply
2.0k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
20 months ago by daewowo ▴ 60
0
votes
0
replies
1.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
21 months ago by daewowo ▴ 60
3
votes
1
reply
703
views
Calculate coverage
coverage
21 months ago by daewowo ▴ 60
0
votes
2
replies
1.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
21 months ago by daewowo ▴ 60
0
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1
reply
1.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
21 months ago by daewowo ▴ 60
0
votes
1
reply
1.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
21 months ago by daewowo ▴ 60
0
votes
1
reply
1.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
21 months ago by daewowo ▴ 60
2
votes
2
replies
626
views
Get read id's from .sam file
sam
updated 21 months ago by 153k • written 21 months ago by ▴ 60
0
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0
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1.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
21 months ago by daewowo ▴ 60
5
votes
13
replies
1.6k
views
Bowtie2 problem when use aligned or unaligned output file for re-alignment
bowtie2
21 months ago by daewowo ▴ 60
0
votes
0
replies
514
views
Comment: Comment: Read alignment anomaly
21 months ago by daewowo ▴ 60
1
vote
1
reply
514
views
Comment: Comment: Read alignment anomaly
21 months ago by daewowo ▴ 60
1
vote
3
replies
514
views
Read alignment anomaly
igv reads rna-seq
21 months ago by daewowo ▴ 60
0
votes
1
reply
761
views
Comment: Comment: Convert sam file with no header to fastq
updated 21 months ago by 127k • written 21 months ago by ▴ 60
0
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1
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761
views
Comment: Comment: Convert sam file with no header to fastq
21 months ago by daewowo ▴ 60
3
votes
6
replies
761
views
Convert sam file with no header to fastq
fastq sam gatk
updated 21 months ago by 71k • written 21 months ago by ▴ 60
2
votes
4
replies
656
views
MagicBLAST only using one thread
MagicBLAST
updated 21 months ago by ▴ 160 • written 21 months ago by ▴ 60
1
vote
0
replies
656
views
Answer: Answer: MagicBLAST only using one thread
21 months ago by daewowo ▴ 60
0
votes
1
reply
656
views
Comment: Comment: MagicBLAST only using one thread
21 months ago by daewowo ▴ 60
0
votes
0
replies
562
views
Comment: Comment: bowtie2 unaligned option not writing to file
21 months ago by daewowo ▴ 60
0
votes
2
replies
562
views
Comment: Comment: bowtie2 unaligned option not writing to file
21 months ago by daewowo ▴ 60
3
votes
4
replies
562
views
bowtie2 unaligned option not writing to file
bowtie2
updated 21 months ago by 11k • written 21 months ago by ▴ 60
0
votes
0
replies
285
views
BioPython Resriction package output formatting
Biopython
23 months ago by daewowo ▴ 60
0
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0
replies
3.1k
views
Comment: Comment: pysam error when reading .bam file ValueError: file has no sequences defined (mo
23 months ago by daewowo ▴ 60
0
votes
1
reply
569
views
Post Alignment basic QC of RNA-Seq data
alignment RNA-Seq
updated 2.0 years ago by 13k • written 2.0 years ago by ▴ 60
56 results • Page 1 of 2
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