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Filter our reads in sam file less than specific length
sam reads
updated 3.2 years ago by 166k • written 3.2 years ago by ▴ 80
0
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0
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1.6k
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Comment: Comment: JGI Seal ArrayIndexOutOfBoundsException
3.7 years ago by daewowo ▴ 80
0
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0
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1.6k
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Comment: Comment: JGI Seal ArrayIndexOutOfBoundsException
3.7 years ago by daewowo ▴ 80
1
vote
3
replies
1.6k
views
JGI Seal ArrayIndexOutOfBoundsException
alignment filtering Seal genome
3.7 years ago by daewowo ▴ 80
0
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0
replies
775
views
NCBI STAT Taxonomy and Krona percentages different
NCBI STAT Krona Taxonomy
3.8 years ago by daewowo ▴ 80
2
votes
1
reply
941
views
Bowtie2 CIGAR value of '*' makes mapping quality in SAM file difficult to interpret
sam bowtie2
updated 3.8 years ago by 89k • written 3.8 years ago by ▴ 80
0
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0
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770
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Magic blast -score parameter
magicblast
3.8 years ago by daewowo ▴ 80
1
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2
replies
1.0k
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Bowtie2 scoring translated to number of non matching nt allowed
bowtie2
3.8 years ago by daewowo ▴ 80
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0
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1.0k
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Comment: Comment: Bowtie2 scoring translated to number of non matching nt allowed
3.8 years ago by daewowo ▴ 80
2
votes
1
reply
1.1k
views
BBSplit ambiguous dataset analysis
bbmap bbsplit
updated 3.8 years ago by 154k • written 3.8 years ago by ▴ 80
2
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3
replies
2.0k
views
Extract human, mouse and pig aligned reads from .bam file alignment to conactenated genomes
Extract ConcatRef bam
3.8 years ago by daewowo ▴ 80
1
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0
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2.0k
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Answer: Answer: Extract human, mouse and pig aligned reads from .bam file alignment to conactena
3.8 years ago by daewowo ▴ 80
0
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0
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2.0k
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Comment: Comment: Extract human, mouse and pig aligned reads from .bam file alignment to conactena
3.8 years ago by daewowo ▴ 80
11
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9
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4.3k
views
Bam file depth of coverage and statstics
Bam
3.9 years ago by daewowo ▴ 80
1
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0
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4.3k
views
Answer: Answer: Bam file depth of coverage and statstics
3.9 years ago by daewowo ▴ 80
0
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0
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4.3k
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Comment: Comment: Bam file depth of coverage and statstics
3.9 years ago by daewowo ▴ 80
0
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2
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9.2k
views
Comment: Comment: Generate GTF file
3.9 years ago by daewowo ▴ 80
0
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1
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4.3k
views
Comment: Comment: Bam file depth of coverage and statstics
3.9 years ago by daewowo ▴ 80
3
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4
replies
9.2k
views
Generate GTF file
GTF
updated 3.9 years ago by 8.0k • written 3.9 years ago by ▴ 80
0
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0
replies
214k
views
Comment: Comment: The Biostar Handbook. A bioinformatics e-book for beginners.
3.9 years ago by daewowo ▴ 80
2
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1
reply
4.3k
views
Comment: Comment: Bam file depth of coverage and statstics
3.9 years ago by daewowo ▴ 80
0
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0
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4.3k
views
Comment: Comment: Bam file depth of coverage and statstics
3.9 years ago by daewowo ▴ 80
4
votes
6
replies
4.9k
views
How to download NCBI fastq data to local machine where access type is "Use Cloud Data Delivery"
delivery NCBI cloud
updated 4.2 years ago by 154k • written 4.2 years ago by ▴ 80
0
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0
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4.9k
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Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
4.2 years ago by daewowo ▴ 80
0
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1
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4.9k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
4.2 years ago by daewowo ▴ 80
0
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1
reply
4.9k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
4.2 years ago by daewowo ▴ 80
0
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0
replies
3.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.2 years ago by daewowo ▴ 80
3
votes
1
reply
1.4k
views
Calculate coverage
coverage
4.3 years ago by daewowo ▴ 80
0
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2
replies
3.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.3 years ago by daewowo ▴ 80
0
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1
reply
3.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.3 years ago by daewowo ▴ 80
0
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1
reply
3.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.3 years ago by daewowo ▴ 80
0
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1
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3.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.3 years ago by daewowo ▴ 80
2
votes
2
replies
1.5k
views
Get read id's from .sam file
sam
updated 4.3 years ago by 166k • written 4.3 years ago by ▴ 80
0
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0
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3.6k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.3 years ago by daewowo ▴ 80
5
votes
13
replies
3.6k
views
Bowtie2 problem when use aligned or unaligned output file for re-alignment
bowtie2
4.2 years ago by daewowo ▴ 80
0
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0
replies
1.3k
views
Comment: Comment: Read alignment anomaly
4.3 years ago by daewowo ▴ 80
1
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1
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1.3k
views
Comment: Comment: Read alignment anomaly
4.3 years ago by daewowo ▴ 80
1
vote
3
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1.3k
views
Read alignment anomaly
igv reads rna-seq
4.3 years ago by daewowo ▴ 80
0
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1
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1.9k
views
Comment: Comment: Convert sam file with no header to fastq
updated 4.3 years ago by 154k • written 4.3 years ago by ▴ 80
0
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1
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1.9k
views
Comment: Comment: Convert sam file with no header to fastq
4.3 years ago by daewowo ▴ 80
3
votes
6
replies
1.9k
views
Convert sam file with no header to fastq
fastq sam gatk
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 80
2
votes
4
replies
1.6k
views
MagicBLAST only using one thread
MagicBLAST
updated 4.3 years ago by ▴ 160 • written 4.3 years ago by ▴ 80
1
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0
replies
1.6k
views
Answer: Answer: MagicBLAST only using one thread
4.3 years ago by daewowo ▴ 80
0
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1
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1.6k
views
Comment: Comment: MagicBLAST only using one thread
4.3 years ago by daewowo ▴ 80
0
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0
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1.5k
views
Comment: Comment: bowtie2 unaligned option not writing to file
4.3 years ago by daewowo ▴ 80
0
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2
replies
1.5k
views
Comment: Comment: bowtie2 unaligned option not writing to file
4.3 years ago by daewowo ▴ 80
3
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4
replies
1.5k
views
bowtie2 unaligned option not writing to file
bowtie2
updated 4.3 years ago by 11k • written 4.3 years ago by ▴ 80
0
votes
0
replies
677
views
BioPython Resriction package output formatting
Biopython
4.4 years ago by daewowo ▴ 80
0
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0
replies
6.8k
views
Comment: Comment: pysam error when reading .bam file ValueError: file has no sequences defined (mo
4.4 years ago by daewowo ▴ 80
0
votes
1
reply
1.0k
views
Post Alignment basic QC of RNA-Seq data
alignment RNA-Seq
updated 4.5 years ago by 15k • written 4.5 years ago by ▴ 80
56 results • Page 1 of 2
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