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Filter our reads in sam file less than specific length
sam reads
updated 3.3 years ago by 166k • written 3.3 years ago by ▴ 80
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1.7k
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Comment: Comment: JGI Seal ArrayIndexOutOfBoundsException
3.9 years ago by daewowo ▴ 80
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0
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1.7k
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Comment: Comment: JGI Seal ArrayIndexOutOfBoundsException
3.9 years ago by daewowo ▴ 80
1
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3
replies
1.7k
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JGI Seal ArrayIndexOutOfBoundsException
alignment filtering Seal genome
3.9 years ago by daewowo ▴ 80
0
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0
replies
812
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NCBI STAT Taxonomy and Krona percentages different
NCBI STAT Krona Taxonomy
3.9 years ago by daewowo ▴ 80
2
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1
reply
1.0k
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Bowtie2 CIGAR value of '*' makes mapping quality in SAM file difficult to interpret
sam bowtie2
updated 3.9 years ago by 90k • written 3.9 years ago by ▴ 80
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0
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821
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Magic blast -score parameter
magicblast
3.9 years ago by daewowo ▴ 80
1
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2
replies
1.1k
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Bowtie2 scoring translated to number of non matching nt allowed
bowtie2
3.9 years ago by daewowo ▴ 80
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0
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1.1k
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Comment: Comment: Bowtie2 scoring translated to number of non matching nt allowed
3.9 years ago by daewowo ▴ 80
2
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1
reply
1.2k
views
BBSplit ambiguous dataset analysis
bbmap bbsplit
updated 3.9 years ago by 154k • written 3.9 years ago by ▴ 80
2
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3
replies
2.1k
views
Extract human, mouse and pig aligned reads from .bam file alignment to conactenated genomes
Extract ConcatRef bam
3.9 years ago by daewowo ▴ 80
1
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0
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2.1k
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Answer: Answer: Extract human, mouse and pig aligned reads from .bam file alignment to conactena
3.9 years ago by daewowo ▴ 80
0
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0
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2.1k
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Comment: Comment: Extract human, mouse and pig aligned reads from .bam file alignment to conactena
3.9 years ago by daewowo ▴ 80
11
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9
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4.5k
views
Bam file depth of coverage and statstics
Bam
4.0 years ago by daewowo ▴ 80
1
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0
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4.5k
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Answer: Answer: Bam file depth of coverage and statstics
4.0 years ago by daewowo ▴ 80
0
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0
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4.5k
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Comment: Comment: Bam file depth of coverage and statstics
4.0 years ago by daewowo ▴ 80
0
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2
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9.5k
views
Comment: Comment: Generate GTF file
4.0 years ago by daewowo ▴ 80
0
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1
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4.5k
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Comment: Comment: Bam file depth of coverage and statstics
4.0 years ago by daewowo ▴ 80
3
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4
replies
9.5k
views
Generate GTF file
GTF
updated 4.0 years ago by 8.1k • written 4.0 years ago by ▴ 80
0
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0
replies
219k
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Comment: Comment: The Biostar Handbook. A bioinformatics e-book for beginners.
4.0 years ago by daewowo ▴ 80
2
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1
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4.5k
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Comment: Comment: Bam file depth of coverage and statstics
4.0 years ago by daewowo ▴ 80
0
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0
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4.5k
views
Comment: Comment: Bam file depth of coverage and statstics
4.0 years ago by daewowo ▴ 80
4
votes
6
replies
5.0k
views
How to download NCBI fastq data to local machine where access type is "Use Cloud Data Delivery"
delivery NCBI cloud
updated 4.3 years ago by 154k • written 4.3 years ago by ▴ 80
0
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0
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5.0k
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Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
4.3 years ago by daewowo ▴ 80
0
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1
reply
5.0k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
4.3 years ago by daewowo ▴ 80
0
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1
reply
5.0k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
4.3 years ago by daewowo ▴ 80
0
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0
replies
3.7k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.4 years ago by daewowo ▴ 80
3
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1
reply
1.5k
views
Calculate coverage
coverage
4.4 years ago by daewowo ▴ 80
0
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2
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3.7k
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Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.4 years ago by daewowo ▴ 80
0
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1
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3.7k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.4 years ago by daewowo ▴ 80
0
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1
reply
3.7k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.4 years ago by daewowo ▴ 80
0
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1
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3.7k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.4 years ago by daewowo ▴ 80
2
votes
2
replies
1.6k
views
Get read id's from .sam file
sam
updated 4.4 years ago by 166k • written 4.4 years ago by ▴ 80
0
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0
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3.7k
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Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
4.4 years ago by daewowo ▴ 80
5
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13
replies
3.7k
views
Bowtie2 problem when use aligned or unaligned output file for re-alignment
bowtie2
4.4 years ago by daewowo ▴ 80
0
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0
replies
1.4k
views
Comment: Comment: Read alignment anomaly
4.4 years ago by daewowo ▴ 80
1
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1
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1.4k
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Comment: Comment: Read alignment anomaly
4.4 years ago by daewowo ▴ 80
1
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3
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1.4k
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Read alignment anomaly
igv reads rna-seq
4.4 years ago by daewowo ▴ 80
0
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1
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2.0k
views
Comment: Comment: Convert sam file with no header to fastq
updated 4.4 years ago by 154k • written 4.4 years ago by ▴ 80
0
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1
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2.0k
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Comment: Comment: Convert sam file with no header to fastq
4.4 years ago by daewowo ▴ 80
3
votes
6
replies
2.0k
views
Convert sam file with no header to fastq
fastq sam gatk
updated 4.4 years ago by 90k • written 4.4 years ago by ▴ 80
2
votes
4
replies
1.7k
views
MagicBLAST only using one thread
MagicBLAST
updated 4.4 years ago by ▴ 160 • written 4.4 years ago by ▴ 80
1
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0
replies
1.7k
views
Answer: Answer: MagicBLAST only using one thread
4.4 years ago by daewowo ▴ 80
0
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1
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1.7k
views
Comment: Comment: MagicBLAST only using one thread
4.4 years ago by daewowo ▴ 80
0
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0
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1.6k
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Comment: Comment: bowtie2 unaligned option not writing to file
4.4 years ago by daewowo ▴ 80
0
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2
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1.6k
views
Comment: Comment: bowtie2 unaligned option not writing to file
4.4 years ago by daewowo ▴ 80
3
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4
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1.6k
views
bowtie2 unaligned option not writing to file
bowtie2
updated 4.4 years ago by 11k • written 4.4 years ago by ▴ 80
0
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0
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718
views
BioPython Resriction package output formatting
Biopython
4.6 years ago by daewowo ▴ 80
0
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0
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7.0k
views
Comment: Comment: pysam error when reading .bam file ValueError: file has no sequences defined (mo
4.6 years ago by daewowo ▴ 80
0
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1
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1.1k
views
Post Alignment basic QC of RNA-Seq data
alignment RNA-Seq
updated 4.7 years ago by 15k • written 4.7 years ago by ▴ 80
56 results • Page 1 of 2
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