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Filter our reads in sam file less than specific length
sam reads
updated 22 months ago by 161k • written 22 months ago by ▴ 80
0
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0
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1.0k
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Comment: Comment: JGI Seal ArrayIndexOutOfBoundsException
2.4 years ago by daewowo ▴ 80
0
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0
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1.0k
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Comment: Comment: JGI Seal ArrayIndexOutOfBoundsException
2.4 years ago by daewowo ▴ 80
1
vote
3
replies
1.0k
views
JGI Seal ArrayIndexOutOfBoundsException
alignment filtering Seal genome
2.4 years ago by daewowo ▴ 80
0
votes
0
replies
509
views
NCBI STAT Taxonomy and Krona percentages different
NCBI STAT Krona Taxonomy
2.4 years ago by daewowo ▴ 80
2
votes
1
reply
586
views
Bowtie2 CIGAR value of '*' makes mapping quality in SAM file difficult to interpret
sam bowtie2
updated 2.4 years ago by 82k • written 2.4 years ago by ▴ 80
0
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0
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469
views
Magic blast -score parameter
magicblast
2.4 years ago by daewowo ▴ 80
1
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2
replies
647
views
Bowtie2 scoring translated to number of non matching nt allowed
bowtie2
2.4 years ago by daewowo ▴ 80
0
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0
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647
views
Comment: Comment: Bowtie2 scoring translated to number of non matching nt allowed
2.4 years ago by daewowo ▴ 80
2
votes
1
reply
686
views
BBSplit ambiguous dataset analysis
bbmap bbsplit
updated 2.4 years ago by 142k • written 2.4 years ago by ▴ 80
2
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3
replies
1.4k
views
Extract human, mouse and pig aligned reads from .bam file alignment to conactenated genomes
Extract ConcatRef bam
2.4 years ago by daewowo ▴ 80
1
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0
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1.4k
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Answer: Answer: Extract human, mouse and pig aligned reads from .bam file alignment to conactena
2.4 years ago by daewowo ▴ 80
0
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0
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1.4k
views
Comment: Comment: Extract human, mouse and pig aligned reads from .bam file alignment to conactena
2.5 years ago by daewowo ▴ 80
11
votes
9
replies
2.8k
views
Bam file depth of coverage and statstics
Bam
2.5 years ago by daewowo ▴ 80
1
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0
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2.8k
views
Answer: Answer: Bam file depth of coverage and statstics
2.5 years ago by daewowo ▴ 80
0
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0
replies
2.8k
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Comment: Comment: Bam file depth of coverage and statstics
2.5 years ago by daewowo ▴ 80
0
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2
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6.6k
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Comment: Comment: Generate GTF file
2.5 years ago by daewowo ▴ 80
0
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1
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2.8k
views
Comment: Comment: Bam file depth of coverage and statstics
2.5 years ago by daewowo ▴ 80
3
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4
replies
6.6k
views
Generate GTF file
GTF
updated 2.5 years ago by 6.4k • written 2.5 years ago by ▴ 80
0
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0
replies
144k
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Comment: Comment: The Biostar Handbook. A bioinformatics e-book for beginners.
2.5 years ago by daewowo ▴ 80
2
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1
reply
2.8k
views
Comment: Comment: Bam file depth of coverage and statstics
2.5 years ago by daewowo ▴ 80
0
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0
replies
2.8k
views
Comment: Comment: Bam file depth of coverage and statstics
2.5 years ago by daewowo ▴ 80
4
votes
6
replies
3.2k
views
How to download NCBI fastq data to local machine where access type is "Use Cloud Data Delivery"
delivery NCBI cloud
updated 2.8 years ago by 142k • written 2.8 years ago by ▴ 80
0
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0
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3.2k
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Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
2.8 years ago by daewowo ▴ 80
0
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1
reply
3.2k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
2.8 years ago by daewowo ▴ 80
0
votes
1
reply
3.2k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
2.8 years ago by daewowo ▴ 80
0
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0
replies
2.4k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
2.9 years ago by daewowo ▴ 80
3
votes
1
reply
1.0k
views
Calculate coverage
coverage
2.9 years ago by daewowo ▴ 80
0
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2
replies
2.4k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
2.9 years ago by daewowo ▴ 80
0
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1
reply
2.4k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
2.9 years ago by daewowo ▴ 80
0
votes
1
reply
2.4k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
2.9 years ago by daewowo ▴ 80
0
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1
reply
2.4k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
2.9 years ago by daewowo ▴ 80
2
votes
2
replies
1.0k
views
Get read id's from .sam file
sam
updated 2.9 years ago by 161k • written 2.9 years ago by ▴ 80
0
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0
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2.4k
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Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
2.9 years ago by daewowo ▴ 80
5
votes
13
replies
2.4k
views
Bowtie2 problem when use aligned or unaligned output file for re-alignment
bowtie2
2.9 years ago by daewowo ▴ 80
0
votes
0
replies
782
views
Comment: Comment: Read alignment anomaly
2.9 years ago by daewowo ▴ 80
1
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1
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782
views
Comment: Comment: Read alignment anomaly
2.9 years ago by daewowo ▴ 80
1
vote
3
replies
782
views
Read alignment anomaly
igv reads rna-seq
2.9 years ago by daewowo ▴ 80
0
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1
reply
1.3k
views
Comment: Comment: Convert sam file with no header to fastq
updated 2.9 years ago by 142k • written 2.9 years ago by ▴ 80
0
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1
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1.3k
views
Comment: Comment: Convert sam file with no header to fastq
2.9 years ago by daewowo ▴ 80
3
votes
6
replies
1.3k
views
Convert sam file with no header to fastq
fastq sam gatk
updated 2.9 years ago by 82k • written 2.9 years ago by ▴ 80
2
votes
4
replies
976
views
MagicBLAST only using one thread
MagicBLAST
updated 2.9 years ago by ▴ 160 • written 2.9 years ago by ▴ 80
1
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0
replies
976
views
Answer: Answer: MagicBLAST only using one thread
2.9 years ago by daewowo ▴ 80
0
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1
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976
views
Comment: Comment: MagicBLAST only using one thread
2.9 years ago by daewowo ▴ 80
0
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0
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935
views
Comment: Comment: bowtie2 unaligned option not writing to file
2.9 years ago by daewowo ▴ 80
0
votes
2
replies
935
views
Comment: Comment: bowtie2 unaligned option not writing to file
2.9 years ago by daewowo ▴ 80
3
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4
replies
935
views
bowtie2 unaligned option not writing to file
bowtie2
updated 2.9 years ago by 11k • written 2.9 years ago by ▴ 80
0
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0
replies
423
views
BioPython Resriction package output formatting
Biopython
3.1 years ago by daewowo ▴ 80
0
votes
0
replies
5.0k
views
Comment: Comment: pysam error when reading .bam file ValueError: file has no sequences defined (mo
3.1 years ago by daewowo ▴ 80
0
votes
1
reply
739
views
Post Alignment basic QC of RNA-Seq data
alignment RNA-Seq
updated 3.2 years ago by 14k • written 3.2 years ago by ▴ 80
56 results • Page 1 of 2
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