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5
votes
8
replies
1.2k
views
ATAC-seq peaks centered between TSS and TES
compute-matrix atac atac-seq tss-enrichment enrichment-graph
5 months ago by buffealo ▴ 130
0
votes
1
reply
325
views
DiffBind count function error related with BiocParallel and IRanges
dba chipseq iranges diffbind
5 months ago by buffealo ▴ 130
0
votes
0
replies
572
views
mageckflute scatterview not labeling centric genes
crispr scatterview mageckflute mageck analysis
19 months ago by buffealo ▴ 130
2
votes
2
replies
986
views
so many zero p-values resulted from mageck mle
crispr mle mageck analysis
19 months ago by buffealo ▴ 130
0
votes
2
replies
6.2k
views
"Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'assay': subscript out of bounds" erro…
countingpeaks diffbind chipseq
updated 2.6 years ago by ★ 2.1k • written 3.0 years ago by ▴ 130
2
votes
7
replies
3.4k
views
merging .narrowPeak files with all of the columns they have
merging overlappinpeaks mergingchipseq narrowpeak chipseq
updated 3.3 years ago by ▴ 810 • written 3.3 years ago by ▴ 130
1
vote
3
replies
1.0k
views
Publicly Available ChIP-seq Samples Does not Overlap
publicdata chipseq overlappinpeaks chipseqoverlap
3.4 years ago by buffealo ▴ 130
4
votes
5
replies
3.1k
views
ChIP-seq heatmap input bed file
bed chip-seq deeptools heatmap
updated 18 months ago by • 0 • written 3.4 years ago by ▴ 130
2
votes
0
replies
1.2k
views
difference between treat_pileup and bdgcmp fold enrichment tracks macs2
chipseq chipsignals chipseqtracks chipseqanalysis IGVtracks
3.5 years ago by buffealo ▴ 130
2
votes
2
replies
1.6k
views
not primary alignment flag filtering does not work
filtering samtools chipsamples chipseq chipseqanalysis
updated 3.5 years ago by ★ 1.3k • written 3.5 years ago by ▴ 130
0
votes
3
replies
1.2k
views
ChIP-seq peak number so high
chipsamples peaknumber chipseq chipseqpeaks chipseqanalysis
3.5 years ago by buffealo ▴ 130
1
vote
0
replies
584
views
How to proceed with multiple runs ChIP-seq
chipsamples seqruns chipseq sequencing chipseqanalysis
3.5 years ago by buffealo ▴ 130
5
votes
5
replies
1.5k
views
Direct - indirect binding of a transcription factor in chip-seq analysis
directbinding indirectbinding trancriptionfactors chipseq chipseqanalysis
updated 3.6 years ago by ▴ 510 • written 3.6 years ago by ▴ 130
0
votes
1
reply
575
views
Choosing the right sample among GEO datasets
GEOdatasets chipsamples celllinesamples chipseq chipseqanalysis
updated 3.7 years ago by 87k • written 3.7 years ago by ▴ 130
4
votes
3
replies
3.3k
views
narrowPeak or summits.bed for HOMER motif finding
motif motiffinding homer macs bedformat
updated 3.8 years ago by ★ 1.6k • written 3.9 years ago by ▴ 130
2
votes
3
replies
1.3k
views
MACS2 does not giving same result before and after chromosome extraction from bam file
chromosome samtools extract peakcalling macs2
updated 3.8 years ago by 11k • written 3.8 years ago by ▴ 130
0
votes
2
replies
823
views
HOMER peak-motif relationship as direct-indirect binding
homermotif directbinding indirectbinding
3.8 years ago by buffealo ▴ 130
0
votes
4
replies
1.2k
views
ChIP-seq correlation with CNS
cnv segmented chip
3.8 years ago by buffealo ▴ 130
0
votes
0
replies
672
views
HOMER average conservation information
homermotif peaks chip-seq annotation motifanalysis
3.8 years ago by buffealo ▴ 130
2
votes
2
replies
977
views
UCSC "chromEnd larger than chrom chr21 size (46750259 > 46709983)" error
bed customtracks peakcall UCSC
updated 3.9 years ago by 150k • written 3.9 years ago by ▴ 130
0
votes
2
replies
1.2k
views
HOMER known motif is unpublished
ChIP-Seq motif HOMER motif finding known motifs
4.1 years ago by buffealo ▴ 130
21 results • Page 1 of 1
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