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Answer: Answer: DiffBind dba.count() BiocParallel error
4 months ago by buffealo ▴ 80
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2
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944
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"Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'assay': subscript out of bounds" erro…
countingpeaks diffbind chipseq
updated 14 days ago by ★ 1.6k • written 4 months ago by ▴ 80
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2.3k
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Comment: Comment: Why ranges of narrowPeak file and that of bed file are not identical
8 months ago by buffealo ▴ 80
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1
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963
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Comment: Comment: merging .narrowPeak files with all of the columns they have
8 months ago by buffealo ▴ 80
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1
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963
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Comment: Comment: merging .narrowPeak files with all of the columns they have
8 months ago by buffealo ▴ 80
0
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1
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963
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Comment: Comment: merging .narrowPeak files with all of the columns they have
8 months ago by buffealo ▴ 80
2
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7
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963
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merging .narrowPeak files with all of the columns they have
merging overlappinpeaks mergingchipseq narrowpeak chipseq
updated 8 months ago by ▴ 440 • written 8 months ago by ▴ 80
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462
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Comment: Comment: Publicly Available ChIP-seq Samples Does not Overlap
9 months ago by buffealo ▴ 80
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3
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462
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Publicly Available ChIP-seq Samples Does not Overlap
publicdata chipseq overlappinpeaks chipseqoverlap
9 months ago by buffealo ▴ 80
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0
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779
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Comment: Comment: ChIP-seq heatmap input bed file
9 months ago by buffealo ▴ 80
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1
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779
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Comment: Comment: ChIP-seq heatmap input bed file
9 months ago by buffealo ▴ 80
3
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4
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779
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ChIP-seq heatmap input bed file
bedfile heatmap chipseqsignal chipseq deeptools
9 months ago by buffealo ▴ 80
2
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0
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470
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difference between treat_pileup and bdgcmp fold enrichment tracks macs2
chipseq chipsignals chipseqtracks chipseqanalysis IGVtracks
11 months ago by buffealo ▴ 80
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0
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36k
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Comment: Comment: How to extract unique mapped results from Bowtie2 bam results?
11 months ago by buffealo ▴ 80
2
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2
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403
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not primary alignment flag filtering does not work
filtering samtools chipsamples chipseq chipseqanalysis
updated 10 months ago by ▴ 830 • written 11 months ago by ▴ 80
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445
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Comment: Comment: ChIP-seq peak number so high
11 months ago by buffealo ▴ 80
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3
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445
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ChIP-seq peak number so high
chipsamples peaknumber chipseq chipseqpeaks chipseqanalysis
11 months ago by buffealo ▴ 80
1
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0
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256
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How to proceed with multiple runs ChIP-seq
chipsamples seqruns chipseq sequencing chipseqanalysis
11 months ago by buffealo ▴ 80
0
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1
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666
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Comment: Comment: Direct - indirect binding of a transcription factor in chip-seq analysis
12 months ago by buffealo ▴ 80
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1
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666
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Comment: Comment: Direct - indirect binding of a transcription factor in chip-seq analysis
12 months ago by buffealo ▴ 80
5
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5
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666
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Direct - indirect binding of a transcription factor in chip-seq analysis
directbinding indirectbinding trancriptionfactors chipseq chipseqanalysis
updated 12 months ago by ▴ 350 • written 12 months ago by ▴ 80
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1
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252
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Choosing the right sample among GEO datasets
GEOdatasets chipsamples celllinesamples chipseq chipseqanalysis
updated 12 months ago by 64k • written 12 months ago by ▴ 80
2
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3
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1.0k
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narrowPeak or summits.bed for HOMER motif finding
motif motiffinding homer macs bedformat
updated 14 months ago by ★ 1.2k • written 15 months ago by ▴ 80
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1
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616
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Comment: Comment: MACS2 does not giving same result before and after chromosome extraction from ba
15 months ago by buffealo ▴ 80
2
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3
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616
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MACS2 does not giving same result before and after chromosome extraction from bam file
chromosome samtools extract peakcalling macs2
updated 14 months ago by 9.5k • written 15 months ago by ▴ 80
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0
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569
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Comment: Comment: ChIP-seq correlation with CNS
15 months ago by buffealo ▴ 80
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0
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382
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Comment: Comment: HOMER peak-motif relationship as direct-indirect binding
15 months ago by buffealo ▴ 80
0
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1
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569
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Comment: Comment: ChIP-seq correlation with CNS
15 months ago by buffealo ▴ 80
0
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2
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382
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HOMER peak-motif relationship as direct-indirect binding
homermotif directbinding indirectbinding
15 months ago by buffealo ▴ 80
0
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4
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569
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ChIP-seq correlation with CNS
cnv segmented chip
15 months ago by buffealo ▴ 80
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1
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1.0k
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Comment: Comment: narrowPeak or summits.bed for HOMER motif finding
15 months ago by buffealo ▴ 80
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0
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268
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HOMER average conservation information
homermotif peaks chip-seq annotation motifanalysis
15 months ago by buffealo ▴ 80
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0
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444
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Comment: Comment: UCSC "chromEnd larger than chrom chr21 size (46750259 > 46709983)" error
15 months ago by buffealo ▴ 80
2
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2
replies
444
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UCSC "chromEnd larger than chrom chr21 size (46750259 > 46709983)" error
bed customtracks peakcall UCSC
updated 15 months ago by 119k • written 15 months ago by ▴ 80
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592
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Comment: C: HOMER known motif is unpublished
18 months ago by buffealo ▴ 80
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2
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592
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HOMER known motif is unpublished
ChIP-Seq motif HOMER motif finding known motifs
18 months ago by buffealo ▴ 80
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