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246
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Comment: Comment: STACKS PCR duplicate removal
20 days ago by maxrwjones ▴ 60
1
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2
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246
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STACKS PCR duplicate removal
PCR VCF STACKS RAD-seq
20 days ago by maxrwjones ▴ 60
0
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0
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417
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Comment: Comment: Including reference genome in SNP-based phylogeny
5 weeks ago by maxrwjones ▴ 60
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0
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417
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Comment: Comment: Including reference genome in SNP-based phylogeny
5 weeks ago by maxrwjones ▴ 60
0
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1
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417
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Comment: Comment: Including reference genome in SNP-based phylogeny
5 weeks ago by maxrwjones ▴ 60
5
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5
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417
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Including reference genome in SNP-based phylogeny
phylogeny VCF WGS
5 weeks ago by maxrwjones ▴ 60
0
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0
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302
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Comment: Comment: Phylogeny from mixed GBS and WGS
9 weeks ago by maxrwjones ▴ 60
1
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2
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302
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Phylogeny from mixed GBS and WGS
VCF Phylogeny GBS WGS tree
9 weeks ago by maxrwjones ▴ 60
12
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22
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4.9k
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Trimmomatic failing to cut known adapter
trimmomatic
updated 17 months ago by 100k • written 2.4 years ago by ▴ 60
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0
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4.9k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.4 years ago by maxrwjones ▴ 60
0
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0
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4.9k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.4 years ago by maxrwjones ▴ 60
1
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2
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4.9k
views
Comment: Comment: Trimmomatic failing to cut known adapter
2.4 years ago by maxrwjones ▴ 60
0
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0
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4.9k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.4 years ago by maxrwjones ▴ 60
0
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1
reply
4.9k
views
Comment: Comment: Trimmomatic failing to cut known adapter
2.4 years ago by maxrwjones ▴ 60
0
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1
reply
4.9k
views
Comment: Comment: Trimmomatic failing to cut known adapter
2.4 years ago by maxrwjones ▴ 60
0
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3
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4.9k
views
Comment: Comment: Trimmomatic failing to cut known adapter
2.4 years ago by maxrwjones ▴ 60
0
votes
1
reply
4.9k
views
Comment: Comment: Trimmomatic failing to cut known adapter
2.4 years ago by maxrwjones ▴ 60
0
votes
0
replies
4.9k
views
Comment: Comment: Trimmomatic failing to cut known adapter
updated 2.4 years ago by 141k • written 2.4 years ago by ▴ 60
0
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1
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4.9k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.4 years ago by maxrwjones ▴ 60
0
votes
2
replies
4.9k
views
Comment: Comment: Trimmomatic failing to cut known adapter
updated 2.4 years ago by 141k • written 2.4 years ago by ▴ 60
0
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0
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839
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Comment: Comment: Confused by MACS2 --scale-to option
2.5 years ago by maxrwjones ▴ 60
2
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2
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839
views
Confused by MACS2 --scale-to option
macs2 macs ChIP ATAC
2.5 years ago by maxrwjones ▴ 60
0
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0
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426
views
bedtools genomecov fractions not summing to 1
genomecov bedtools
2.9 years ago by maxrwjones ▴ 60
1
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0
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1.9k
views
Comment: Comment: Bedtools intersect PE BAM reads
2.9 years ago by maxrwjones ▴ 60
3
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2
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1.9k
views
Bedtools intersect PE BAM reads
intersect BAM bedtools
2.9 years ago by maxrwjones ▴ 60
0
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0
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1.2k
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Comment: Comment: Bedtools intersect 0- and 1-based coordinate files
2.9 years ago by maxrwjones ▴ 60
2
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2
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1.2k
views
Bedtools intersect 0- and 1-based coordinate files
gff intersect bedtools bam
2.9 years ago by maxrwjones ▴ 60
0
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0
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2.7k
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Comment: Comment: BAI index format
3.0 years ago by maxrwjones ▴ 60
0
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0
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2.7k
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Comment: Comment: BAI index format
3.0 years ago by maxrwjones ▴ 60
1
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1
reply
2.7k
views
Comment: Comment: BAI index format
3.0 years ago by maxrwjones ▴ 60
0
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1
reply
2.7k
views
Comment: Comment: BAI index format
3.0 years ago by maxrwjones ▴ 60
0
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1
reply
2.7k
views
Comment: Comment: BAI index format
3.0 years ago by maxrwjones ▴ 60
0
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1
reply
2.7k
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Comment: Comment: BAI index format
3.0 years ago by maxrwjones ▴ 60
6
votes
12
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2.7k
views
BAI index format
BAI index BAM CSI
3.0 years ago by maxrwjones ▴ 60
0
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0
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988
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Comment: Comment: Samtools view filter by reference sequence
3.0 years ago by maxrwjones ▴ 60
2
votes
2
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988
views
Samtools view filter by reference sequence
samtools
3.0 years ago by maxrwjones ▴ 60
0
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0
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2.2k
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Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
3.0 years ago by maxrwjones ▴ 60
0
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1
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2.2k
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Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
3.0 years ago by maxrwjones ▴ 60
4
votes
7
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2.2k
views
How are BWA/bowtie/etc indices built for multiple fasta entries?
index fasta mapping BWA bowtie
3.0 years ago by maxrwjones ▴ 60
0
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0
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2.2k
views
Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
3.0 years ago by maxrwjones ▴ 60
0
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0
replies
2.2k
views
Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
3.0 years ago by maxrwjones ▴ 60
0
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0
replies
1.5k
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Comment: Comment: ATAC-seq - remove mt reads using KMC
3.1 years ago by maxrwjones ▴ 60
0
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1
reply
1.5k
views
Comment: Comment: ATAC-seq - remove mt reads using KMC
3.1 years ago by maxrwjones ▴ 60
2
votes
4
replies
1.5k
views
ATAC-seq - remove mt reads using KMC
samtools chrM ATAC-seq mitochondria KMC
3.1 years ago by maxrwjones ▴ 60
0
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0
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917
views
Comment: Comment: How can a duplicate read be interchromosomal?
3.1 years ago by maxrwjones ▴ 60
0
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0
replies
1.9k
views
Comment: Comment: Bowtie2 & Hisat2 SAM flags above 256?
3.1 years ago by maxrwjones ▴ 60
0
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2
replies
917
views
How can a duplicate read be interchromosomal?
interchromosomal duplicate NGS samtools picard
3.1 years ago by maxrwjones ▴ 60
0
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0
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1.9k
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Comment: Comment: Bowtie2 & Hisat2 SAM flags above 256?
3.1 years ago by maxrwjones ▴ 60
0
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2
replies
1.9k
views
Comment: Comment: Bowtie2 & Hisat2 SAM flags above 256?
3.1 years ago by maxrwjones ▴ 60
4
votes
5
replies
1.9k
views
Bowtie2 & Hisat2 SAM flags above 256?
manual SAM read-mapping flags bowtie2
3.1 years ago by maxrwjones ▴ 60
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