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Comment: Comment: STACKS PCR duplicate removal
19 months ago by maxrwjones ▴ 60
1
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2
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1.3k
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STACKS PCR duplicate removal
PCR VCF STACKS RAD-seq
19 months ago by maxrwjones ▴ 60
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0
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1.5k
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Comment: Comment: Including reference genome in SNP-based phylogeny
19 months ago by maxrwjones ▴ 60
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0
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1.5k
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Comment: Comment: Including reference genome in SNP-based phylogeny
19 months ago by maxrwjones ▴ 60
0
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1
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1.5k
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Comment: Comment: Including reference genome in SNP-based phylogeny
19 months ago by maxrwjones ▴ 60
5
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5
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1.5k
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Including reference genome in SNP-based phylogeny
phylogeny VCF WGS
19 months ago by maxrwjones ▴ 60
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0
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945
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Comment: Comment: Phylogeny from mixed GBS and WGS
20 months ago by maxrwjones ▴ 60
1
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2
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945
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Phylogeny from mixed GBS and WGS
VCF Phylogeny GBS WGS tree
20 months ago by maxrwjones ▴ 60
12
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22
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8.3k
views
Trimmomatic failing to cut known adapter
trimmomatic
updated 2.9 years ago by 103k • written 3.9 years ago by ▴ 60
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0
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8.3k
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Comment: Comment: Trimmomatic failing to cut known adapter
3.9 years ago by maxrwjones ▴ 60
0
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0
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8.3k
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Comment: Comment: Trimmomatic failing to cut known adapter
3.9 years ago by maxrwjones ▴ 60
1
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2
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8.3k
views
Comment: Comment: Trimmomatic failing to cut known adapter
3.9 years ago by maxrwjones ▴ 60
0
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0
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8.3k
views
Comment: Comment: Trimmomatic failing to cut known adapter
3.9 years ago by maxrwjones ▴ 60
0
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1
reply
8.3k
views
Comment: Comment: Trimmomatic failing to cut known adapter
3.9 years ago by maxrwjones ▴ 60
0
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1
reply
8.3k
views
Comment: Comment: Trimmomatic failing to cut known adapter
3.9 years ago by maxrwjones ▴ 60
0
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3
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8.3k
views
Comment: Comment: Trimmomatic failing to cut known adapter
3.9 years ago by maxrwjones ▴ 60
0
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1
reply
8.3k
views
Comment: Comment: Trimmomatic failing to cut known adapter
3.9 years ago by maxrwjones ▴ 60
0
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0
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8.3k
views
Comment: Comment: Trimmomatic failing to cut known adapter
updated 3.9 years ago by 154k • written 3.9 years ago by ▴ 60
0
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1
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8.3k
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Comment: Comment: Trimmomatic failing to cut known adapter
3.9 years ago by maxrwjones ▴ 60
0
votes
2
replies
8.3k
views
Comment: Comment: Trimmomatic failing to cut known adapter
updated 3.9 years ago by 154k • written 3.9 years ago by ▴ 60
0
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0
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1.5k
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Comment: Comment: Confused by MACS2 --scale-to option
4.0 years ago by maxrwjones ▴ 60
2
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2
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1.5k
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Confused by MACS2 --scale-to option
macs2 macs ChIP ATAC
4.0 years ago by maxrwjones ▴ 60
0
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0
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638
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bedtools genomecov fractions not summing to 1
genomecov bedtools
4.4 years ago by maxrwjones ▴ 60
1
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0
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3.0k
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Comment: Comment: Bedtools intersect PE BAM reads
4.4 years ago by maxrwjones ▴ 60
3
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2
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3.0k
views
Bedtools intersect PE BAM reads
intersect BAM bedtools
4.4 years ago by maxrwjones ▴ 60
0
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0
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1.8k
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Comment: Comment: Bedtools intersect 0- and 1-based coordinate files
4.5 years ago by maxrwjones ▴ 60
2
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2
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1.8k
views
Bedtools intersect 0- and 1-based coordinate files
gff intersect bedtools bam
4.5 years ago by maxrwjones ▴ 60
0
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0
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4.1k
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Comment: Comment: BAI index format
4.5 years ago by maxrwjones ▴ 60
0
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0
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4.1k
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Comment: Comment: BAI index format
4.5 years ago by maxrwjones ▴ 60
1
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1
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4.1k
views
Comment: Comment: BAI index format
4.5 years ago by maxrwjones ▴ 60
0
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1
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4.1k
views
Comment: Comment: BAI index format
4.5 years ago by maxrwjones ▴ 60
0
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1
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4.1k
views
Comment: Comment: BAI index format
4.5 years ago by maxrwjones ▴ 60
0
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1
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4.1k
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Comment: Comment: BAI index format
4.5 years ago by maxrwjones ▴ 60
6
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12
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4.1k
views
BAI index format
BAI index BAM CSI
4.5 years ago by maxrwjones ▴ 60
0
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0
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1.6k
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Comment: Comment: Samtools view filter by reference sequence
4.5 years ago by maxrwjones ▴ 60
2
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2
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1.6k
views
Samtools view filter by reference sequence
samtools
4.5 years ago by maxrwjones ▴ 60
0
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0
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3.3k
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Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
4.5 years ago by maxrwjones ▴ 60
0
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1
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3.3k
views
Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
4.5 years ago by maxrwjones ▴ 60
4
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7
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3.3k
views
How are BWA/bowtie/etc indices built for multiple fasta entries?
index fasta mapping BWA bowtie
4.5 years ago by maxrwjones ▴ 60
0
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0
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3.3k
views
Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
4.6 years ago by maxrwjones ▴ 60
0
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0
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3.3k
views
Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
4.6 years ago by maxrwjones ▴ 60
0
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0
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2.5k
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Comment: Comment: ATAC-seq - remove mt reads using KMC
4.6 years ago by maxrwjones ▴ 60
0
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1
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2.5k
views
Comment: Comment: ATAC-seq - remove mt reads using KMC
4.6 years ago by maxrwjones ▴ 60
2
votes
4
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2.5k
views
ATAC-seq - remove mt reads using KMC
samtools chrM ATAC-seq mitochondria KMC
4.6 years ago by maxrwjones ▴ 60
0
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0
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1.5k
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Comment: Comment: How can a duplicate read be interchromosomal?
4.6 years ago by maxrwjones ▴ 60
0
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0
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2.9k
views
Comment: Comment: Bowtie2 & Hisat2 SAM flags above 256?
4.6 years ago by maxrwjones ▴ 60
0
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2
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1.5k
views
How can a duplicate read be interchromosomal?
interchromosomal duplicate NGS samtools picard
4.6 years ago by maxrwjones ▴ 60
0
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0
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2.9k
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Comment: Comment: Bowtie2 & Hisat2 SAM flags above 256?
4.6 years ago by maxrwjones ▴ 60
0
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2
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2.9k
views
Comment: Comment: Bowtie2 & Hisat2 SAM flags above 256?
4.6 years ago by maxrwjones ▴ 60
4
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5
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2.9k
views
Bowtie2 & Hisat2 SAM flags above 256?
manual SAM read-mapping flags bowtie2
4.6 years ago by maxrwjones ▴ 60
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