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Comment:
Comment: Jensen-Shannon Divergence (Capra and Singh, 2007) scored with substitution matri
17 months ago by
Jonathan Lefebre
▴ 70
1
vote
2
replies
715
views
Jensen-Shannon Divergence (Capra and Singh, 2007) scored with substitution matrix for conservation score
multiple-sequence-alignment
conservation
updated 17 months ago by
Ram
44k • written 17 months ago by
Jonathan Lefebre
▴ 70
0
votes
0
replies
912
views
Answer:
Answer: Need help using Biopython
18 months ago by
Jonathan Lefebre
▴ 70
1
vote
0
replies
5.9k
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Comment:
Comment: Getting Pairwise Sequence Alignment Score With Biopython
18 months ago by
Jonathan Lefebre
▴ 70
1
vote
1
reply
5.9k
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Answer:
Answer: Getting Pairwise Sequence Alignment Score With Biopython
18 months ago by
Jonathan Lefebre
▴ 70
1
vote
0
replies
434
views
Considering gaps in calculating conservation score from MSA
multiple
alignment
sequence
conservation
python
18 months ago by
Jonathan Lefebre
▴ 70
3
votes
2
replies
1.1k
views
Filtering AA sequences of PDB structures by sequence identity
identity
python
sequence
updated 2.4 years ago by
Mensur Dlakic
★ 28k • written 2.4 years ago by
Jonathan Lefebre
▴ 70
0
votes
0
replies
4.4k
views
Comment:
Comment: Splitting several PDB files into chains and save as separate files
2.8 years ago by
Jonathan Lefebre
▴ 70
3
votes
4
replies
4.4k
views
Splitting several PDB files into chains and save as separate files
biology
python
PDB
structural
biopython
updated 2.8 years ago by
Wayne
★ 2.1k • written 2.8 years ago by
Jonathan Lefebre
▴ 70
0
votes
1
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1.7k
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Comment:
Comment: Iterating over several PDB files in ProDy module
3.1 years ago by
Jonathan Lefebre
▴ 70
4
votes
4
replies
1.7k
views
Iterating over several PDB files in ProDy module
python
iteration
Prody
updated 3.1 years ago by
Wayne
★ 2.1k • written 3.1 years ago by
Jonathan Lefebre
▴ 70
4
votes
2
replies
1.4k
views
Filtering MSA by similiarity to a consensus sequence/motif
biopython
motif
multiple
alignment
MSA
python
sequence
search
updated 3.3 years ago by
Joe
21k • written 3.3 years ago by
Jonathan Lefebre
▴ 70
3
votes
1
reply
856
views
Is reclustering of a cluster obtained from hierarchical clustering "allowed"?
analysis
cluster
hierarchical
clustering
updated 3.4 years ago by
German.M.Demidov
★ 2.9k • written 3.4 years ago by
Jonathan Lefebre
▴ 70
1
vote
1
reply
862
views
Retrieving Clusters from Clustermatrix, obtained with Hierarchical Clustering
seaborn
python
Hierarchical
clustering
updated 3.4 years ago by
zorbax
▴ 650 • written 3.4 years ago by
Jonathan Lefebre
▴ 70
4
votes
6
replies
2.3k
views
Measuring pairwise distances between residues/atoms in structural alignment of protein family
biopython
protein
alignment
distance
pairwise
updated 3.4 years ago by
Joe
21k • written 3.4 years ago by
Jonathan Lefebre
▴ 70
0
votes
1
reply
2.3k
views
Answer:
Answer: Measuring pairwise distances between residues/atoms in structural alignment of p
3.4 years ago by
Jonathan Lefebre
▴ 70
0
votes
0
replies
2.3k
views
Comment:
Comment: Measuring pairwise distances between residues/atoms in structural alignment of p
3.4 years ago by
Jonathan Lefebre
▴ 70
0
votes
0
replies
585
views
Measuring pairwise distances between pockets in structural alignment
biopython
protein
alignment
distance
pairwise
3.4 years ago by
Jonathan Lefebre
▴ 70
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