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119
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Trajectory analysis using Monocle3 with Seurat sub-clustering
scRNA-seq Trajectory Seurat analysis Monocle3
1 day ago by joonhong kwon ▴ 40
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516
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Comment: Comment: Error in R: System command 'Rcmd.exe' failed
29 days ago by joonhong kwon ▴ 40
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516
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Error in R: System command 'Rcmd.exe' failed
CrossTalkeR package R Rcmd
29 days ago by joonhong kwon ▴ 40
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210
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DEG analysis and cell number(proportion or frequency) comparison in scRNA-seq
scRNA-seq snRNA-seq DEG
3 months ago by joonhong kwon ▴ 40
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377
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Comment: Comment: Why are some cells of Cell type A located in Cell type B in scRNA-seq clustering
3 months ago by joonhong kwon ▴ 40
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2
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377
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Why are some cells of Cell type A located in Cell type B in scRNA-seq clustering?
Clustering scRNA-seq snRNA-seq UMAP
3 months ago by joonhong kwon ▴ 40
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641
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Comment: Comment: Pseudo-bulk DEG analysis with Multi-tissue in scRNA-seq
4 months ago by joonhong kwon ▴ 40
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641
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Comment: Comment: Pseudo-bulk DEG analysis with Multi-tissue in scRNA-seq
4 months ago by joonhong kwon ▴ 40
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1
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641
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Comment: Comment: Pseudo-bulk DEG analysis with Multi-tissue in scRNA-seq
4 months ago by joonhong kwon ▴ 40
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6
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641
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Pseudo-bulk DEG analysis with Multi-tissue in scRNA-seq
scRNA-seq Pseudo-bulk Seurat DEG DESeq2
4 months ago by joonhong kwon ▴ 40
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290
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Comment: Comment: Limma Pairwise (Paired sample) DEG analysis
4 months ago by joonhong kwon ▴ 40
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2
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290
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Limma Pairwise (Paired sample) DEG analysis
ttest Limma Paired DEG
4 months ago by joonhong kwon ▴ 40
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0
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356
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Comment: Comment: Single cell RNA-seq DEG analysis on multi-tissue
10 months ago by joonhong kwon ▴ 40
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2
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356
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Single cell RNA-seq DEG analysis on multi-tissue
DEG snRNA-seq scRNA-seq
10 months ago by joonhong kwon ▴ 40
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0
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835
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Comment: Comment: Two peak in histogram before single cell RNA-seq QC & Filtering
12 months ago by joonhong kwon ▴ 40
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1
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835
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Comment: Comment: Two peak in histogram before single cell RNA-seq QC & Filtering
12 months ago by joonhong kwon ▴ 40
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5
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835
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Two peak in histogram before single cell RNA-seq QC & Filtering
QC PBMC scRNAseq histogram
12 months ago by joonhong kwon ▴ 40
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0
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835
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Comment: Comment: Two peak in histogram before single cell RNA-seq QC & Filtering
12 months ago by joonhong kwon ▴ 40
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1
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1.8k
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Comment: Comment: DoubletFinder and Seurat integration
13 months ago by joonhong kwon ▴ 40
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3
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1.8k
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DoubletFinder and Seurat integration
DoubletFinder scRNAseq Seurat integration
updated 13 months ago by 70k • written 13 months ago by ▴ 40
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484
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Comment: Comment: About 'Estimated Number of cells' in snRNA-seq
15 months ago by joonhong kwon ▴ 40
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2
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484
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About 'Estimated Number of cells' in snRNA-seq
snRNA-seq scRNA-seq QC
15 months ago by joonhong kwon ▴ 40
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5.8k
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Comment: Comment: seurat, subcluster and trajectory analysis (Monocle 3)
15 months ago by joonhong kwon ▴ 40
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4
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5.8k
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seurat, subcluster and trajectory analysis (Monocle 3)
scRNA-seq trajectory Monocle3 seurat
updated 3 months ago by ▴ 40 • written 15 months ago by ▴ 40
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993
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Comment: Comment: Batch effect that is same as main factor
17 months ago by joonhong kwon ▴ 40
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993
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Comment: Comment: Batch effect that is same as main factor
17 months ago by joonhong kwon ▴ 40
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2
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993
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Comment: Comment: Batch effect that is same as main factor
17 months ago by joonhong kwon ▴ 40
2
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6
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993
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Batch effect that is same as main factor
RNA-Seq effect batch brain
17 months ago by joonhong kwon ▴ 40
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