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Comment: Comment: DESeq2 lfcshrink, shrinkage apeglm vs normal
13 months ago by joonhong kwon ▴ 70
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DESeq2 lfcshrink, shrinkage apeglm vs normal
DESeq2 RNA-seq DEG shrinkage
updated 13 months ago by 3.2k • written 13 months ago by ▴ 70
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402
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Paired vs Unpaired t-test: Compositional analysis in the Human snRNA-seq data
snRNA-seq scRNA-seq analysis statistic compositional
14 months ago by joonhong kwon ▴ 70
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592
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ambient RNA quality control in scRNA-seq
cellranger scRNA-seq QC seurat snRNA-seq
17 months ago by joonhong kwon ▴ 70
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704
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Trajectory analysis using Monocle3 with Seurat sub-clustering
scRNA-seq Trajectory Seurat analysis Monocle3
20 months ago by joonhong kwon ▴ 70
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3.7k
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Comment: Comment: Error in R: System command 'Rcmd.exe' failed
21 months ago by joonhong kwon ▴ 70
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3.7k
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Error in R: System command 'Rcmd.exe' failed
CrossTalkeR package R Rcmd
21 months ago by joonhong kwon ▴ 70
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0
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447
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DEG analysis and cell number(proportion or frequency) comparison in scRNA-seq
scRNA-seq snRNA-seq DEG
23 months ago by joonhong kwon ▴ 70
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0
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749
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Comment: Comment: Why are some cells of Cell type A located in Cell type B in scRNA-seq clustering
24 months ago by joonhong kwon ▴ 70
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2
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749
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Why are some cells of Cell type A located in Cell type B in scRNA-seq clustering?
Clustering scRNA-seq snRNA-seq UMAP
24 months ago by joonhong kwon ▴ 70
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1.3k
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Comment: Comment: Pseudo-bulk DEG analysis with Multi-tissue in scRNA-seq
2.1 years ago by joonhong kwon ▴ 70
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1.3k
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Comment: Comment: Pseudo-bulk DEG analysis with Multi-tissue in scRNA-seq
2.1 years ago by joonhong kwon ▴ 70
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1.3k
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Comment: Comment: Pseudo-bulk DEG analysis with Multi-tissue in scRNA-seq
2.1 years ago by joonhong kwon ▴ 70
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6
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1.3k
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Pseudo-bulk DEG analysis with Multi-tissue in scRNA-seq
scRNA-seq Pseudo-bulk Seurat DEG DESeq2
2.1 years ago by joonhong kwon ▴ 70
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1.5k
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Comment: Comment: Limma Pairwise (Paired sample) DEG analysis
2.1 years ago by joonhong kwon ▴ 70
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2
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1.5k
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Limma Pairwise (Paired sample) DEG analysis
ttest Limma Paired DEG
2.1 years ago by joonhong kwon ▴ 70
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0
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685
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Comment: Comment: Single cell RNA-seq DEG analysis on multi-tissue
2.6 years ago by joonhong kwon ▴ 70
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2
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685
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Single cell RNA-seq DEG analysis on multi-tissue
DEG snRNA-seq scRNA-seq
2.6 years ago by joonhong kwon ▴ 70
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1.6k
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Comment: Comment: Two peak in histogram before single cell RNA-seq QC & Filtering
2.7 years ago by joonhong kwon ▴ 70
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1.6k
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Comment: Comment: Two peak in histogram before single cell RNA-seq QC & Filtering
2.7 years ago by joonhong kwon ▴ 70
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5
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1.6k
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Two peak in histogram before single cell RNA-seq QC & Filtering
QC PBMC scRNAseq histogram
2.7 years ago by joonhong kwon ▴ 70
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1.6k
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Comment: Comment: Two peak in histogram before single cell RNA-seq QC & Filtering
2.7 years ago by joonhong kwon ▴ 70
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4.6k
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Comment: Comment: DoubletFinder and Seurat integration
2.8 years ago by joonhong kwon ▴ 70
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3
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4.6k
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DoubletFinder and Seurat integration
DoubletFinder scRNAseq Seurat integration
updated 2.8 years ago by 85k • written 2.8 years ago by ▴ 70
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838
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Comment: Comment: About 'Estimated Number of cells' in snRNA-seq
2.9 years ago by joonhong kwon ▴ 70
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2
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838
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About 'Estimated Number of cells' in snRNA-seq
snRNA-seq scRNA-seq QC
2.9 years ago by joonhong kwon ▴ 70
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10.0k
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Comment: Comment: seurat, subcluster and trajectory analysis (Monocle 3)
3.0 years ago by joonhong kwon ▴ 70
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4
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10.0k
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seurat, subcluster and trajectory analysis (Monocle 3)
scRNA-seq trajectory Monocle3 seurat
updated 2.0 years ago by ▴ 40 • written 3.0 years ago by ▴ 70
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1.6k
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Comment: Comment: Batch effect that is same as main factor
3.1 years ago by joonhong kwon ▴ 70
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1.6k
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Comment: Comment: Batch effect that is same as main factor
3.1 years ago by joonhong kwon ▴ 70
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2
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1.6k
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Comment: Comment: Batch effect that is same as main factor
3.2 years ago by joonhong kwon ▴ 70
2
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6
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1.6k
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Batch effect that is same as main factor
batch-effect RNA-Seq
updated 3 months ago by 44k • written 3.2 years ago by ▴ 70
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