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4
votes
3
replies
1.1k
views
FastQC polyA and polyG trimming in RNA-seq
polyA QC trimming RNA-seq Fastq
4 months ago by joonhong kwon ▴ 70
1
vote
3
replies
2.6k
views
DESeq2 lfcshrink, shrinkage apeglm vs normal
DESeq2 RNA-seq DEG shrinkage
updated 19 months ago by 3.2k • written 19 months ago by ▴ 70
0
votes
0
replies
494
views
Paired vs Unpaired t-test: Compositional analysis in the Human snRNA-seq data
snRNA-seq scRNA-seq analysis statistic compositional
20 months ago by joonhong kwon ▴ 70
0
votes
0
replies
718
views
ambient RNA quality control in scRNA-seq
cellranger scRNA-seq QC seurat snRNA-seq
22 months ago by joonhong kwon ▴ 70
0
votes
0
replies
865
views
Trajectory analysis using Monocle3 with Seurat sub-clustering
scRNA-seq Trajectory Seurat analysis Monocle3
2.1 years ago by joonhong kwon ▴ 70
1
vote
2
replies
4.2k
views
Error in R: System command 'Rcmd.exe' failed
CrossTalkeR package R Rcmd
2.2 years ago by joonhong kwon ▴ 70
0
votes
0
replies
504
views
DEG analysis and cell number(proportion or frequency) comparison in scRNA-seq
scRNA-seq snRNA-seq DEG
2.4 years ago by joonhong kwon ▴ 70
1
vote
2
replies
877
views
Why are some cells of Cell type A located in Cell type B in scRNA-seq clustering?
Clustering scRNA-seq snRNA-seq UMAP
2.4 years ago by joonhong kwon ▴ 70
2
votes
6
replies
1.5k
views
Pseudo-bulk DEG analysis with Multi-tissue in scRNA-seq
scRNA-seq Pseudo-bulk Seurat DEG DESeq2
2.5 years ago by joonhong kwon ▴ 70
1
vote
2
replies
1.8k
views
Limma Pairwise (Paired sample) DEG analysis
ttest Limma Paired DEG
2.5 years ago by joonhong kwon ▴ 70
0
votes
2
replies
791
views
Single cell RNA-seq DEG analysis on multi-tissue
DEG snRNA-seq scRNA-seq
3.0 years ago by joonhong kwon ▴ 70
0
votes
5
replies
1.8k
views
Two peak in histogram before single cell RNA-seq QC & Filtering
QC PBMC scRNAseq histogram
3.2 years ago by joonhong kwon ▴ 70
5
votes
3
replies
5.2k
views
DoubletFinder and Seurat integration
DoubletFinder scRNAseq Seurat integration
updated 3.2 years ago by 88k • written 3.3 years ago by ▴ 70
0
votes
2
replies
955
views
About 'Estimated Number of cells' in snRNA-seq
snRNA-seq scRNA-seq QC
3.4 years ago by joonhong kwon ▴ 70
4
votes
4
replies
11k
views
seurat, subcluster and trajectory analysis (Monocle 3)
scRNA-seq trajectory Monocle3 seurat
updated 2.5 years ago by ▴ 40 • written 3.4 years ago by ▴ 70
2
votes
6
replies
1.8k
views
Batch effect that is same as main factor
batch-effect RNA-Seq
updated 8 months ago by 45k • written 3.6 years ago by ▴ 70
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