How to find Human-Mouse othologs from Ensembl BioMart and also how to obtain those sequences.
I found a few posts in Biostars and 1 article.
Finding a orthologous genes between human and mouse along with percent alignment?
Homologous gene matching between mouse and human
Identifying orthologous exons between human and mouse
mouse exome sequencing : disease gene prioritization?
Retrieving Dn Or Ds From Ensembl Using Biomart
Look at UCSC.
Mouse Sequence Compared To Human Sequence
How to get mouse-human homologues table from UCSC?
What are the human and mouse reference genome (hg19, mm9) based on IGV?
To download cds see Ensemble ftp site, mentioned in the post below:
How can i retrieve all cds from a ensembl genetree？
BioMart will allow you to get the sequences for the orthologues if you combine two queries. There are instructions on how to do this here:
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