Hi, I would like to annotate a plant genome. I have also some RNA-Seq data.
Here ( https://www.sunflowergenome.org/annotations/ ) there described that they used the below technologies in order to annotate the sunflower genome:
- Gene predictions from EuGene
- Gene predictions from AUGUSTUS
- Gene predictions from SNAP
- Transcript assemblies from StringTie
I also found other pipelines:
and there is, even more, here ( https://omictools.com/genome-annotation-category )
Which one to choose?
Thank you in advance.