Question: RNA-secondary structure prediction software (T-boxes, riboswitches and attenuators search)
2
gravatar for natasha.sernova
4 months ago by
natasha.sernova3.4k
natasha.sernova3.4k wrote:

Dear all,

I think I’ve collected most of the available posts

from Biostars about RNA-secondary structure prediction software:

(T-boxes, riboswitches and attenuators search).

Most of them are 5-6 years old, but some are recent.

I hope someone else has made a better collection,

simply I didn’t find it. Please, help me!

This one, A: How We Can Get The Secondary And Tertiary Structure For Interest Of Rna

is very nice, but 5.3 years old.

Search in NCBI, for example, gives more than 2000

articles, but it’s impossible to look through all of them.

Thank you!!

Natasha

RNA_secondary structure:

RNA secondary structure prediction

Secondary Structure Prediction software RNA/DNA

Finding Motif Representation Of A Given Secondary Structure Of Rna Sequence

How To Find Known Local Secondary Structures In Rna

pictures

Linear Or 2D Representation Of Protein Sequence Secondary Structure

RNA secondary structure - Feature extraction

hairpin, attenuators

Looking for hairpin loops

A: CNA vs mRNA Expression level

https://go.mail.ru/search?fm=1&q=search%20for%20attenuator%20in%20RNA%20secondary%20structure&sbmt=1542733989299&src=go

search for attenuator in RNA secondary structure

A: Efficient way to check pdb enzyme protein models with certain mutations if the a

https://www.tbi.univie.ac.at/papers/Abstracts/martin_diss.pdf

attenuator riboswitch rna t-box • 224 views
ADD COMMENTlink modified 18 days ago • written 4 months ago by natasha.sernova3.4k
1

This is my question too. Is there a strategy for choosing RNA secondary structure prediction software? ...a lot of options https://en.wikipedia.org/wiki/List_of_RNA_structure_prediction_software

ADD REPLYlink modified 22 days ago • written 22 days ago by Sergey_Fin20

Sergey, thank you! I saw the article in WIKI, but I didn't

pay any attention to the references. They look useful.

ADD REPLYlink written 22 days ago by natasha.sernova3.4k

Oh, there are more tools! The right panel is really useful!

Programs for RNA secondary structure predictions

ADD REPLYlink written 18 days ago by natasha.sernova3.4k
1
gravatar for Sergey_Fin
21 days ago by
Sergey_Fin20
Sergey_Fin20 wrote:

RNA_secondary structure - (2017) http://www.bioinf.uni-freiburg.de/Publications/Fallmann_Will_Engelhardt-Recen_advan_RNA-2017.pdf

ADD COMMENTlink written 21 days ago by Sergey_Fin20
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