I did a complete genome assembly and generated archivi bam. Now I need to mark the duplicates and I could not. How do I solve this problem?
You should really provide some more information for people to be able to help you.
Well, what did you try?
gatk MarkDuplicates \INPUT=home/ims.santos06/bam/SRR062634.bam\
How To Ask Good Questions On Technical And Scientific Forums
Were there any error messages?
I used this command:
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