Where Can I Download The Public Version Of The The Human Gene Mutation Database (Hgmd)
3
1
Entering edit mode
8.2 years ago

Hi,

I would like to download "HGMD public version" . could you please let me know how i can do that?

Thank you

• 14k views
ADD COMMENT
2
Entering edit mode

Come on, this information can be found via a simple Web search. You register here using an academic email address.

ADD REPLY
0
Entering edit mode

Hi, I'm registered and I can access to the public version of HGMD but how can I download it? Thanks

ADD REPLY
4
Entering edit mode
6.0 years ago
stensonpd ▴ 70

HGMD data are not available for bulk download from the HGMD Public website. hg19 coordinates for HGMD variants are available as part of Ensembl, but are limited to coordinates only and are 3 years out of date. The full dataset is available without restriction under license from Qiagen/Biobase.

ADD COMMENT
2
Entering edit mode
8.2 years ago

Just adding the comment by Neilfws as an answer, as the page says:

Please note that the public version of our database is free only for registered users from academic institutions/non-profit organisations. Commercial users are required to purchase a license from BIOBASE, our commercial partner. The HGMD Professional license is available to both commercial and academic/non-profit users wishing to access the most up-to-date version of the database. HGMD mutation data are made available via the public site 3 years after initial inclusion.

The URL is: http://www.hgmd.cf.ac.uk/docs/register.html

ADD COMMENT
1
Entering edit mode
6.0 years ago
ajingnk ▴ 130


I still have the same problem. I am an academic user (PhD student). But, after login, I still cannot find any link for download. I have no problem to search or browse, but I need the whole data set.

ADD COMMENT
1
Entering edit mode

You will have to check with BioBase - they offer a different license to access the data through MySQL, and you'll need that for bulk download. If you try bots, they block your IP.

ADD REPLY
0
Entering edit mode

So anyway to download the whole dataset in VCF format?

ADD REPLY
0
Entering edit mode

Did you try emailing them? I'm not sure they even have it all in VCF format.

ADD REPLY
0
Entering edit mode

Okay. any format will be fine, is there any way to get the whole list?

ADD REPLY
0
Entering edit mode

As has been stated before, you should contact the owner of the resource. Or get a quote from Quiagen for the commercial version.

ADD REPLY

Login before adding your answer.

Traffic: 1749 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6