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Comment: HGVS Nomenclature of Multiple Indels found in Cis
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LauferVA
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how has this code progressed? is it publically available? would you want to work together?
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Ezequiel
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I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
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marco.barr
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Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
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ATpoint
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Use everything before the whitespace in list.txt, for example `A00869:294:HCW57DSXY:2:1101:3929:1000` and not `A00869:294:HCW57DSXY:2:1101:…
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scideas
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I actually had this same issue with CellRanger v7- turns out that since you have 2 species in your mapping reference, CellRanger is forcing…
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Assume you have genotype data in Plink format. (G.bed, G.bim, G.fam) Download some reference panel data in Plink format (R.bed, R.bim, R.f…
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors)
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nguyenn6
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did you ever figure it out? i'm having the same issue.
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Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
Comment: constructing pangenome through psvcp
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analyst
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Fixed the issue by updating nucmer version.
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Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
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you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
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What is your question? It's unclear.
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One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
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See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
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txema.heredia
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Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
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