Showing: bowtiereset
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.fai index in BWA / bowtie / bowtie2 / minimap2
minimap2 bowtie2 bwa bowtie index written 20 days ago by Severus Snape0 • updated 20 days ago by h.mon26k
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142
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Bowtie2 simple alignment errors?
bowtie2 alignment bowtie written 28 days ago by vctrm670 • updated 28 days ago by h.mon26k
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203
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5 follow
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Best practices for differential expression analysis
best transcriptome mapping bowtie rna-seq written 7 weeks ago by flogin150 • updated 7 weeks ago by Bastien HervĂ©4.4k
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6 follow
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How do I run Tophat?
tophat bowtie written 4.4 years ago by from the mountains60 • updated 7 weeks ago by h.mon26k
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140
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Relaxed alignment using Bowtie
alignment bowtie written 3 months ago by seqalign0 • updated 9 weeks ago by Biostar ♦♦ 20
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Getting End Location of Alignment from Bowtie 2
bowtie written 4 months ago by eholleman120 • updated 3 months ago by Biostar ♦♦ 20
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Bowtie out put interpretation
alignment next-gen rna-seq bowtie written 3 months ago by bioz10 • updated 3 months ago by Friederike4.8k
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rsem-parse-alignments failed due to bowtie-produced partial alignments
rsem bowtie written 4 months ago by Angel0 • updated 4 months ago by swbarnes26.1k
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5 follow
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bowtie (1) 0% alignment on paired-end RNAseq data
alignment bowtie rna-seq mirna written 4 months ago by gulamaltab0 • updated 4 months ago by ATpoint21k
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bowtie --best, what exactly does it mean?
bowtie rna-seq mapping written 4 months ago by slapiiv40 • updated 4 months ago by Charles Warden7.2k
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7 follow
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TopHat mapping error
tophat bowtie rna-seq written 4 months ago by gokberk60 • updated 4 months ago by genomax70k
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Tophat Error - What Does This Mean?
tophat error bowtie written 6.0 years ago by newDNASeqer650 • updated 4 months ago by Biostar ♦♦ 20
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All the CIGAR strings of reads mapped by Bowtie are "I"
bowtie written 3.8 years ago by yhu10thu0 • updated 4 months ago by Biostar ♦♦ 20
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Number of reads in Fastq and Bowtie
genome fastq bowtie sequencing written 5 months ago by yp1930 • updated 5 months ago by h.mon26k
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GMAP or Bowtie index from FASTA of genes
gmap bowtie written 7 months ago by gtasource20 • updated 5 months ago by Biostar ♦♦ 20
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Understanding Bowtie output
alignment bowtie written 6 months ago by am370 • updated 6 months ago by manuel.belmadani1.1k
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How to convert output from bowtie1 to Genomic ranges
genomicranges rna-seq bowtie written 6 months ago by Konstantinos Yeles40 • updated 6 months ago by ATpoint21k
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How to get cigar string from bwa or bowtie
bowtie written 6 months ago by juan.crescente20 • updated 6 months ago by Santosh Anand4.9k
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get only reads that has multiple alignment on bowtie
bowtie rna-seq written 4.9 years ago by dinarussia0 • updated 7 months ago by David Langenberger9.0k
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Mapping Gene Models Back to a Reference Genome of Closely Related Species
gmap bowtie written 7 months ago by gtasource20 • updated 7 months ago by Vitis2.2k
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5 follow
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Read count difference between STAR and Bowtie
smallrna mirna-seq bowtie star written 8 months ago by hothriananya60 • updated 8 months ago by ATpoint21k
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bowtie reported reads and aligned reads number doesn't match
bowtie written 8 months ago by LLili0 • updated 8 months ago by Bastien HervĂ©4.4k
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 4.0 years ago by vinumanikandan0 • updated 9 months ago by Biostar ♦♦ 20
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compare two list of nucleotide sequences
mummer sequence blast bowtie written 10 months ago by karthic100 • updated 10 months ago by jrj.healey13k
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11 follow
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An Alternative To Blastx With Speed Similar To Bowtie
nucleotide alignment protein blast bowtie written 7.5 years ago by Tianyang Li490 • updated 10 months ago by h.mon26k
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