Showing: bowtiereset
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rsem-parse-alignments failed due to bowtie-produced partial alignments
rsem bowtie written 1 day ago by Angel0 • updated 1 day ago by swbarnes25.2k
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5 follow
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bowtie (1) 0% alignment on paired-end RNAseq data
alignment bowtie rna-seq mirna written 3 days ago by gulamaltab0 • updated 3 days ago by ATpoint15k
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111
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bowtie --best, what exactly does it mean?
bowtie rna-seq mapping written 4 days ago by slapiiv20 • updated 4 days ago by Charles Warden6.5k
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44
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7 follow
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TopHat mapping error
tophat bowtie rna-seq written 14 days ago by gokberk0 • updated 14 days ago by genomax65k
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Tophat Error - What Does This Mean?
tophat error bowtie written 5.7 years ago by newDNASeqer630 • updated 18 days ago by Biostar ♦♦ 20
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All the CIGAR strings of reads mapped by Bowtie are "I"
bowtie written 3.4 years ago by yhu10thu0 • updated 20 days ago by Biostar ♦♦ 20
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1
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Number of reads in Fastq and Bowtie
genome fastq bowtie sequencing written 8 weeks ago by yl201910 • updated 8 weeks ago by h.mon24k
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GMAP or Bowtie index from FASTA of genes
gmap bowtie written 3 months ago by gtasource20 • updated 8 weeks ago by Biostar ♦♦ 20
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Understanding Bowtie output
alignment bowtie written 8 weeks ago by am370 • updated 8 weeks ago by manuel.belmadani730
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How to convert output from bowtie1 to Genomic ranges
genomicranges rna-seq bowtie written 9 weeks ago by Konstantinos Yeles40 • updated 9 weeks ago by ATpoint15k
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148
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How to get cigar string from bwa or bowtie
bowtie written 10 weeks ago by juan.crescente20 • updated 10 weeks ago by Santosh Anand4.7k
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get only reads that has multiple alignment on bowtie
bowtie rna-seq written 4.6 years ago by dinarussia0 • updated 3 months ago by David Langenberger8.7k
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170
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Mapping Gene Models Back to a Reference Genome of Closely Related Species
gmap bowtie written 3 months ago by gtasource20 • updated 3 months ago by Vitis2.1k
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431
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5 follow
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Read count difference between STAR and Bowtie
smallrna mirna-seq bowtie star written 4 months ago by hothriananya50 • updated 4 months ago by ATpoint15k
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bowtie reported reads and aligned reads number doesn't match
bowtie written 4 months ago by LLili0 • updated 4 months ago by Bastien Hervé4.0k
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 3.6 years ago by vinumanikandan0 • updated 5 months ago by Biostar ♦♦ 20
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compare two list of nucleotide sequences
mummer sequence blast bowtie written 6 months ago by karthic100 • updated 6 months ago by jrj.healey11k
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An Alternative To Blastx With Speed Similar To Bowtie
nucleotide alignment protein blast bowtie written 7.2 years ago by Tianyang Li490 • updated 6 months ago by h.mon24k
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251
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Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 7 months ago by NAVID.BAVI0 • updated 7 months ago by RamRS21k
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How Do I Get Some Basic Counts From Readaligned?
short R bioconductor bowtie aligner written 9.0 years ago by Jeremy Leipzig18k • updated 7 months ago by RamRS21k
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326
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Bowtie2 Alignment Score Meaning
rna-seq bowtie written 7 months ago by biogirl040 • updated 7 months ago by Devon Ryan89k
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Should --very-sensitive be combined with -no-1mm-upfront?
bowtie2 bowtie written 7 months ago by Lucy0 • updated 7 months ago by Devon Ryan89k
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