Showing: bowtiereset
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get only reads that has multiple alignment on bowtie
bowtie rna-seq written 4.3 years ago by dinarussia0 • updated 14 days ago by David Langenberger8.4k
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111
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1
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Mapping Gene Models Back to a Reference Genome of Closely Related Species
gmap bowtie written 19 days ago by gtasource20 • updated 19 days ago by Vitis1.7k
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191
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5 follow
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Read count difference between STAR and Bowtie
smallrna mirna-seq bowtie star written 5 weeks ago by hothriananya50 • updated 5 weeks ago by ATpoint12k
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bowtie reported reads and aligned reads number doesn't match
bowtie written 6 weeks ago by LLili0 • updated 6 weeks ago by Bastien HervĂ©2.8k
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150
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Values used for calculating FPKM Value
rpkm fpkm bowtie written 3.4 years ago by vinumanikandan0 • updated 9 weeks ago by Biostar ♦♦ 20
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214
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1
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compare two list of nucleotide sequences
mummer sequence blast bowtie written 3 months ago by karthic100 • updated 3 months ago by jrj.healey9.6k
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11 follow
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An Alternative To Blastx With Speed Similar To Bowtie
nucleotide alignment protein blast bowtie written 7.0 years ago by Tianyang Li490 • updated 3 months ago by h.mon22k
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399
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173
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Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 4 months ago by NAVID.BAVI0 • updated 4 months ago by RamRS20k
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How Do I Get Some Basic Counts From Readaligned?
short R bioconductor bowtie aligner written 8.8 years ago by Jeremy Leipzig18k • updated 4 months ago by RamRS20k
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241
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Bowtie2 Alignment Score Meaning
rna-seq bowtie written 4 months ago by biogirl040 • updated 4 months ago by Devon Ryan87k
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Should --very-sensitive be combined with -no-1mm-upfront?
bowtie2 bowtie written 4 months ago by Lucy0 • updated 4 months ago by Devon Ryan87k
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How can I Rectify Segmentation fault: 11?
smrna mapping bowtie written 4 months ago by jaqx00840 • updated 4 months ago by h.mon22k
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274
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567
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204
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Problems running ViromeScan - could not locate a Bowtie2 index
bowtie viromescan rna-seq written 5 months ago by Guillermo D. Huerta10 • updated 5 months ago by genomax60k
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200
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Getting BAM files using Bowtie
software error assembly bowtie rna-seq mapping written 5 months ago by NAVID.BAVI0 • updated 5 months ago by h.mon22k
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STAR genome index with and/or with out *.gtf annotation
gtf alignment star rna-seq bowtie written 2.7 years ago by kirannbishwa01900 • updated 5 months ago by drskm70
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view Bowtie2 alignment results
alignment results bowtie written 6 months ago by lkianmehr30 • updated 6 months ago by h.mon22k
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265
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Tophat2 Error gzip pipe broken? zipped file empty?
tophat2 alignment rna-seq bowtie gzip written 6 months ago by biogirl040 • updated 6 months ago by h.mon22k
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unmapped reads in paired-end run pf bowtie2
paired-end bowtie unmapped-reads written 6 months ago by Assa Yeroslaviz1.1k • updated 6 months ago by Devon Ryan87k
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285
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1
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Low % of aligned reads
alignment galaxy rna-seq bowtie written 8 months ago by kml20 • updated 8 months ago by Vijay Lakhujani3.5k
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269
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Benchmarking single SNP mapping
snps bowtie wgsim bwa mapping written 8 months ago by Josh Herr5.6k • updated 8 months ago by Biostar ♦♦ 20
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