Showing: bowtiereset
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RPKM with bowtie output
rpkm rna bowtie count written 21 days ago by flogin150 • updated 1 day ago by anoo0
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94
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How to view read mapping from Bowtie2, Samtools, etc
bowtie2 samtools bowtie readmapping written 20 days ago by ksipes0 • updated 20 days ago by Asaf6.5k
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40 follow
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Tutorial: Mapping Reads With Bwa And Bowtie
tutorial bowtie bwa written 7.6 years ago by MSU course 2011500 • updated 6 weeks ago by ATpoint26k
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Tophat Error: It Tries To Execute Lines In Fastq Files
tophat bowtie error written 6.3 years ago by newDNASeqer650 • updated 9 weeks ago by Biostar ♦♦ 20
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Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
bowtie2 tophat tophat2 bowtie rna-seq written 3.0 years ago by ashMC10 • updated 12 weeks ago by Arnaud Ceol840
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Bowtie-build - reference genome issue
mirbase rna-seq bowtie written 3 months ago by chupalav0 • updated 3 months ago by Buffo1.7k
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.fai index in BWA / bowtie / bowtie2 / minimap2
minimap2 bowtie2 bwa bowtie index written 3 months ago by Severus Snape0 • updated 3 months ago by h.mon28k
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225
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Bowtie2 simple alignment errors?
bowtie2 alignment bowtie written 4 months ago by vctrm6710 • updated 4 months ago by h.mon28k
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307
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5 follow
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Best practices for differential expression analysis
best transcriptome mapping bowtie rna-seq written 4 months ago by flogin150 • updated 4 months ago by Bastien Hervé4.5k
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6 follow
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How do I run Tophat?
tophat bowtie written 4.6 years ago by from the mountains80 • updated 4 months ago by h.mon28k
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184
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Relaxed alignment using Bowtie
alignment bowtie written 6 months ago by seqalign0 • updated 5 months ago by Biostar ♦♦ 20
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Getting End Location of Alignment from Bowtie 2
bowtie written 7 months ago by eholleman120 • updated 6 months ago by Biostar ♦♦ 20
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Bowtie out put interpretation
alignment next-gen rna-seq bowtie written 6 months ago by bioz10 • updated 6 months ago by Friederike5.2k
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rsem-parse-alignments failed due to bowtie-produced partial alignments
rsem bowtie written 7 months ago by Angel0 • updated 7 months ago by swbarnes27.0k
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5 follow
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bowtie (1) 0% alignment on paired-end RNAseq data
alignment bowtie rna-seq mirna written 7 months ago by gulamaltab0 • updated 7 months ago by ATpoint26k
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bowtie --best, what exactly does it mean?
bowtie rna-seq mapping written 7 months ago by slapiiv40 • updated 7 months ago by Charles Warden7.4k
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11
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7 follow
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TopHat mapping error
tophat bowtie rna-seq written 7 months ago by gokberk60 • updated 7 months ago by genomax74k
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Tophat Error - What Does This Mean?
tophat error bowtie written 6.2 years ago by newDNASeqer650 • updated 7 months ago by Biostar ♦♦ 20
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All the CIGAR strings of reads mapped by Bowtie are "I"
bowtie written 4.0 years ago by yhu10thu0 • updated 7 months ago by Biostar ♦♦ 20
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4
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Number of reads in Fastq and Bowtie
genome fastq bowtie sequencing written 9 months ago by yp1950 • updated 9 months ago by h.mon28k
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GMAP or Bowtie index from FASTA of genes
gmap bowtie written 10 months ago by gtasource30 • updated 9 months ago by Biostar ♦♦ 20
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Understanding Bowtie output
alignment bowtie written 9 months ago by am370 • updated 9 months ago by manuel.belmadani1.1k
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How to convert output from bowtie1 to Genomic ranges
genomicranges rna-seq bowtie written 9 months ago by Konstantinos Yeles70 • updated 9 months ago by ATpoint26k
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