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Recent Replies
Answer: Index genome not working in Tracy
by
trausch
★
1.8k
This should work:
```
bgzip CMVrefGenome.fasta
samtools faidx CMVrefGenome.fasta.gz
tracy index -o CMVrefGenome.fasta.fm9 CMVrefGenome.fas…
Comment: Need help in microarray data analysis
by
rishav513
•
0
Sorry for the disturbance, but I solved it now. Thank you all for your time.
Comment: Getting information on CRAM files from headers inside the files
by
GenoMax
123k
Only part that differs in the names is the `5**` number --> `CL100063425_L01_**524**`. If you think that indicates a different sample then …
Comment: How to find newly submitted accessions in NCBI
by
GenoMax
123k
Technically there is a field for TaxID in the output that `runinfo` option in the command above but it is sadly not populated for many entr…
Comment: Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: Index 1 out
by
Pierre Lindenbaum
150k
check the syntax of the file SRR_adapters.fa
Comment: Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: Index 1 out
by
didemdostt
•
0
if you know that would be great.
Comment: Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: Index 1 out
by
didemdostt
•
0
I am indecisive about where to run the command(whether in the input directory or in the directory trimmomatic is in). When I run in differe…
Comment: Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: Index 1 out
by
Pierre Lindenbaum
150k
so you fixed the problem for your previous question ???? https://www.biostars.org/p/9546616/#9546641
Answer: Why my application works well but when I try to modularize it, it doesn't work p
by
Sib
▴
40
The question was solved here: https://stackoverflow.com/questions/74572339/why-my-application-works-well-but-when-i-try-to-modularize-it-it…
Comment: How to download the entire Run from Basespace illumina
by
Apex92
▴
210
Dear Amitm, thank you for your comment it helped a lot. As you mentioned the problem was with ``` ./bs auth``` which I had not run before a…
Comment: Exec format error
by
didemdostt
•
0
What do you mean exactly? How can I fix it can you help me please?
Comment: Exec format error
by
Pierre Lindenbaum
150k
I suspect there is a space or a cariage return in your original script. The shell tries to invoke the fastqs file if it was an executable.
Comment: Locating IBD candidates with just VCF files
by
4galaxy77
2.5k
Hard to say without knowing exactly what code you've used. Have you tried using some kind of off the shelf IBD algorithm like hap-IBD? I kn…
Comment: How to obtain read count in the output file in ncbi-blast+ standalone applicatio
by
khq5801
▴
10
Hi..I have used bowtie and aligned my NGS sample with reference genome, then I separated the mapped sequences and started doing ncbi-blast+…
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