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27
votes
4
answers
826
views
8 follow
4
answers
Similarity between two FASTA files
similarity distance written 10 months ago by rmf • 650 • updated 13 days ago by Biostar ♦♦ 20
4
votes
1
answer
151
views
1
answer
Distance for gene expression samples
rna-seq distance written 7 weeks ago by chipolino • 40 • updated 7 weeks ago by Kevin Blighe ♦ 44k
3
votes
3
answers
3.2k
views
3
answers
Script to list residues within a given distance from ligand
binding site protein ligand distance residues written 3.2 years ago by miromoman • 10 • updated 8 weeks ago by db4 • 0
3
votes
3
answers
5.1k
views
6 follow
3
answers
From Distance Matrix To Network
network cytoscape distance written 5.8 years ago by SamGG • 20 • updated 3 months ago by Kevin Blighe ♦ 44k
2
votes
1
answer
222
views
1
answer
Bedtools merge -d option help
bedtools ubuntu rstudio distance bedr written 3 months ago by jantu008 • 0
0
votes
0
answers
264
views
0
answers
sequence distance to consensus shorter than within NJ tree?
sequence distance dating written 8 months ago by tenax • 0
0
votes
0
answers
299
views
0
answers
Variant distance bias (VDB) in VCF format: how to compute properly?
vcf vdb variant distance bias written 13 months ago by Macspider • 2.8k
12
votes
2
answers
4.0k
views
6 follow
2
answers
Mafft Output Distance Matrix
phylogenetics alignment distance written 8.2 years ago by Gabriel Mitchell • 520 • updated 16 months ago by Ghoti • 50
0
votes
1
answer
2.1k
views
1
answer
dist.alignment vs dist.dna for DNA distance calculation
R ape seqinr distance dna written 3.3 years ago by rimjhim.roy.ch • 70 • updated 18 months ago by sagitaninta • 0
1
vote
1
answer
722
views
1
answer
Script for Gene Clustering.
gene cluster merge distance written 2.1 years ago by talalamin • 0 • updated 2.1 years ago by Ben • 50
17
votes
3
answers
6.1k
views
6 follow
3
answers
Compute Genetic Map
genetics map distance written 9.3 years ago by Pierre • 480 • updated 2.1 years ago by Biostar ♦♦ 20
22
votes
4
answers
4.1k
views
5 follow
4
answers
Removing Redundant Amino Acid Sequences From Fasta - Tools And Algorithms
fasta sequence distance written 8.6 years ago by Jacek • 100 • updated 2.3 years ago by Eslam Samir • 100
0
votes
0
answers
970
views
0
answers
Estimating genetics distance with python prgram
python distance program code divergence written 2.4 years ago by enrightnm • 0
1
vote
3
answers
2.9k
views
3
answers
Neighbor Joining And Distance
alignment distance written 6.0 years ago by rmoenree • 0 • updated 2.4 years ago by minacom_84 • 0
0
votes
0
answers
1.2k
views
0
answers
R package: a circular plot for genetic distance.
R genes distance circular genetic written 2.4 years ago by Baptiste • 90 • updated 2.4 years ago by Biostar ♦♦ 20
2
votes
2
answers
2.5k
views
2
answers
Genetic Distance Versus Physical Distance
distance written 5.4 years ago by Adrian Pelin • 2.3k • updated 2.5 years ago by panly89 • 10
3
votes
1
answer
1.0k
views
1
answer
How to determine the average distance between known motif in a list of DNA sequences
R sequence motif distance written 2.7 years ago by kevinm • 30 • updated 2.7 years ago by Macherki M E • 120
15
votes
4
answers
3.3k
views
7 follow
4
answers
Splicing Definition
splicing mutation distance written 7.7 years ago by Liyf • 290 • updated 2.8 years ago by Biostar ♦♦ 20
0
votes
1
answer
2.6k
views
1
answer
Newick To Distance Matrix
matrix newick tree distance written 5.2 years ago by Haluk • 170 • updated 3.5 years ago by Biostar ♦♦ 20
0
votes
0
answers
1.2k
views
0
answers
OTU distances and assumptions
otu phylogenetics scoring distance clustering written 3.7 years ago by jnf3769 • 40
3
votes
1
answer
1.4k
views
1
answer
Distance between Position weight matrices using a substitution matrix
pwm substitution matrix distance written 4.0 years ago by marco23.p • 0 • updated 4.0 years ago by Jean-Karim Heriche ♦ 19k
18
votes
5
answers
12k
views
10 follow
5
answers
Script To Calculate A Distance Matrix Based On Tree File
matrix phylogenetics tree distance written 8.2 years ago by Arjen Ten Have • 350 • updated 4.1 years ago by guanhomer • 20
6
votes
4
answers
2.4k
views
4
answers
Evolutionary distance models
model evolution distance written 4.2 years ago by samuel.zachej • 20
0
votes
0
answers
1.2k
views
0
answers
Clustering based on Alignment
genomic coordinates bowtie distance rna-seq written 4.3 years ago by ilyco • 50 • updated 4.3 years ago by Biostar ♦♦ 20
2
votes
2
answers
7.1k
views
5 follow
2
answers
Compute Affinity Matrix From Distance Matrix
multiple-alignment clustalw protein distance written 6.2 years ago by ericmajinglong • 100 • updated 4.5 years ago by Jean-Karim Heriche ♦ 19k
5
votes
3
answers
2.6k
views
3
answers
VCF + Phylogenetic tree : how to calculate the distance between two set of samples
vcf phylogenetic tree distance written 4.6 years ago by Pierre Lindenbaum ♦ 120k • updated 4.6 years ago by Jeremy Leipzig ♦ 18k
3
votes
2
answers
2.2k
views
2
answers
Distance between two gene sets
gene-set distance written 4.6 years ago by The • 100
2
votes
2
answers
7.0k
views
2
answers
bigwig : peak distance from specific genomic region
chip-seq bigwig distance closest bed written 5.0 years ago by Nicolas Rosewick ♦ 7.7k • updated 4.8 years ago by Biostar ♦♦ 20
5
votes
1
answer
1.7k
views
5 follow
1
answer
Which cut-off for collapsing this tree?
homology distance orthology collapse newick written 5.1 years ago by a1ultima • 710 • updated 5.1 years ago by Asaf ♦ 5.7k
14
votes
3
answers
3.8k
views
6 follow
3
answers
Collapse Clades In A Newick Tree With Average Distance To Tips < X
phylogeny tree distance written 5.2 years ago by a1ultima • 710
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