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Pindel installation failing due to htslib
htslib docker pindel written 11 weeks ago by cdastmalchi • 0 • updated 14 hours ago by steve • 2.4k
2
votes
1
answer
85
views
1
answer
How to perform iteration task inside a docker image (RNA-seq analysis)
quantification docker rna-seq written 14 days ago by dodausp • 130 • updated 14 days ago by Barry Digby • 290
2
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1
answer
187
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1
answer
Can't install DESeq2 via Docker container because of dependency issues
gene R deseq2 docker rna-seq written 5 weeks ago by cdastmalchi • 0 • updated 5 weeks ago by sviatoslav.kendall • 760
4
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0
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243
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0
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Forum: Kubernetes in Production?
forum webservice kubernetes ci/cd docker written 8 weeks ago by acamukhin • 0
6
votes
1
answer
256
views
5 follow
1
answer
salmon was only able to assign 0 fragments to transcripts
windows10 salmon docker rna-seq written 3 months ago by naseerkhan861 • 0 • updated 3 months ago by yztxwd • 290
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186
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0
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Tool: Compi: Application Framework for Portable Computational Pipelines
workflow management system pipeline docker tool written 4 months ago by Hugo • 190
0
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1
answer
275
views
1
answer
How to run Picard docker image
alignment next-gen picard docker written 4 months ago by elcortegano • 20
1
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250
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0
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Job: Research Associate in Genomics Pipelines @ UEA, Norwich, UK
docker cancer job ngs bioinformatics pipelines written 7 months ago by dan.brewer • 70
4
votes
1
answer
461
views
1
answer
CWL docker command user
cwl-runner cwl docker written 8 months ago by dganiewich • 90 • updated 8 months ago by Tom • 520
2
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0
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297
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0
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How does bbduk calculate it's memory requirements?
bbduk docker memory written 9 months ago by Lina F • 160
0
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1
answer
268
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1
answer
How to mount my data into docker container through -v command?
container docker rna-seq bash scripting written 9 months ago by F. Golestan • 50
0
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0
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398
views
0
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How to run R docker in WDL?
wdl R cromwell docker gatk written 10 months ago by c.clarido • 50
1
vote
0
answers
774
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Job: Computer scientist or bioinformatician with strong computational background
web next-gen database docker job written 12 months ago by Arnaud Ceol • 850 • updated 10 months ago by wallssus • 0
0
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0
answers
389
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0
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Job: Cloud engineer to support interdisciplinary cancer biology research
cloud computing systems administration docker job written 11 months ago by mwendl • 0
4
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522
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Page: Bioinformatics Docker Images Project (https://pegi3s.github.io/dockerfiles/)
page bioinformatics docker containers written 11 months ago by pegi3sdocker • 20
2
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0
answers
565
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0
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How to install CRISPRdisco
docker written 14 months ago by saadleeshehreen • 70 • updated 14 months ago by Michael Dondrup ♦ 47k
1
vote
1
answer
456
views
1
answer
How to run SPAdes inside docker?
container cwl docker written 14 months ago by jeetsahu • 10 • updated 14 months ago by Michael R. Crusoe • 1.8k
0
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0
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348
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0
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furious-luke/lizards-are-awesome package for ubuntu
gwas python docker linux written 16 months ago by bulbul • 10
0
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0
answers
392
views
0
answers
Jitterbug, mobile element tool, docker container
jitterbug docker mobile elements written 21 months ago by filippo.martignano • 10
1
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1
answer
1.1k
views
1
answer
samtools and docker
software docker written 21 months ago by genya35 • 20 • updated 21 months ago by Eric Lim • 1.6k
4
votes
0
answers
607
views
0
answers
Workflow for Releasing HPC Pipeline via Docker
deployment ngs pipeline docker hpc written 22 months ago by aostern • 30
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1
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1.1k
views
1
answer
CWL: build docker image with DockerRequirements: dockerFile?
cwl docker written 2.1 years ago by ninsch3000 • 10 • updated 22 months ago by sshinya • 10
3
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1
answer
927
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1
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I'm putting a pipeline into docker, where do I store the tar files for my dependencies, on GitHub or within the Docker image?
pipeline docker written 2.1 years ago by SaltedPork • 100 • updated 2.1 years ago by Eric Lim • 1.6k
2
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2
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1.1k
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6 follow
2
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rna seq docker
docker written 2.7 years ago by novicebioinforesearcher • 50 • updated 2.4 years ago by ypriverol • 0
1
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0
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1.2k
views
0
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Job: Bioinformatician, NCI Genomic Data Commons at the University of Chicago, Chicago, IL, USA
python cwl job docker written 2.5 years ago by Danielle • 310 • updated 2.5 years ago by genomax ♦ 78k
1
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1
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3.8k
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1
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Docker error "Mounts denied" running example workflows from CWL User Guide on Mac OS X
mac os x common workflow language cwl docker macos written 2.7 years ago by Kevin Ernst • 0
2
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0
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1.1k
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Tutorial: Help demonstrate reproducibility in bioinformatics with the GA4GH's tool execution Challenge
cwl tutorial ga4gh rabix docker written 3.0 years ago by adrian.sharma • 20
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1.3k
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0
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Job: Bioinformatics Specialist Position - Mexico
bioinformatician docker job bash written 3.1 years ago by bridget.a.mcmahon • 20
0
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1.1k
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0
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Job: Bioinformatics Specialist Position - London, UK
bioinformatics bash docker job linux written 3.1 years ago by bridget.a.mcmahon • 20
28
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4
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1.1k
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I want to store a docker image reproducing a paper. Is there a host for docker images of studies?
reproducible docker written 3.5 years ago by endrebak • 810 • updated 3.5 years ago by Giovanni M Dall'Olio ♦ 26k
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