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<prev • 898 results • page 1 of 30 • next >
4
votes
2
answers
91
views
2
answers
Remove extra sequences without unique names from fasta
fasta duplicates sequence uniq bash written 21 hours ago by nmkn • 0 • updated 21 hours ago by Pierre Lindenbaum ♦ 108k
48
votes
6
answers
38k
views
18 follow
6
answers
How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Sequences In A Single File
fasta next-gen sequencing perl R rna written 6.7 years ago by Hamilton • 260 • updated 2 days ago by har-wradim • 20
1
vote
0
answers
166
views
5 follow
0
answers
grep/awk issue: can't extract sequences from a fasta file
fasta extraction sequence grep shell written 4 days ago by benoit.kunath • 10
1
vote
1
answer
760
views
5 follow
1
answer
Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 17 months ago by R.Blues • 80 • updated 5 days ago by nicolas.dussex • 30
3
votes
1
answer
99
views
1
answer
GFF3 to fasta (error)
gff3 fasta extract file written 8 days ago by wocana • 0
20
votes
3
answers
10k
views
8 follow
3
answers
Fasta File To Sam Conversion
fasta format sam conversion written 7.1 years ago by Rallapalli Sukeerthi Teja • 10 • updated 9 days ago by harishchander.a • 0
1
vote
0
answers
126
views
0
answers
get size information from an OTU table into a fastafile for use in USEARCH/VSEARCH
fasta header otu table written 8 weeks ago by EBP91 • 0
5
votes
4
answers
138
views
8 follow
4
answers
Extract fasta sequences from a file using a list in another file.
fasta grep header extract awk written 14 days ago by EBP91 • 0 • updated 14 days ago by cpad0112 ♦ 6.3k
2
votes
1
answer
284
views
1
answer
How to convert bam into fasta with chromosome name in fasta file having consensus sequences in fasta file
fasta bam written 3 months ago by Kritika • 250 • updated 14 days ago by Biostar ♦♦ 20
3
votes
1
answer
165
views
1
answer
Plot sequences using matplotlib
fasta sequencing matplotlib plot written 16 days ago by N Mukherjee • 0
0
votes
3
answers
304
views
3
answers
Changing names of Fasta headers
fasta sequence sed unix bash loop written 3 months ago by tpaisie • 70 • updated 20 days ago by h.mon ♦ 15k
0
votes
0
answers
74
views
0
answers
How to download FASTA file from psRNAtarget
fasta sequence script download batch written 22 days ago by ebrahimi.re67 • 0
3
votes
1
answer
140
views
1
answer
Difference in chromosome numbering
bedtools R next-gen fasta written 23 days ago by banerjeeshayantan • 50 • updated 22 days ago by zx8754 ♦ 4.5k
0
votes
0
answers
110
views
0
answers
Error when running PfamScan: Fasta file contains two sequences with same ID
genome proteome sequence pfamscan fasta written 22 days ago by philmster90 • 0
3
votes
2
answers
190
views
2
answers
FASTA file with taxid, want to obtain lineage and put into header
fasta ncbi taxdump taxonomy written 25 days ago by mariahaguiar001 • 0 • updated 25 days ago by Chris S. • 290
0
votes
1
answer
246
views
1
answer
FIMO target coordinates in fasta file
fasta fimo meme motif written 5 months ago by rbronste • 160 • updated 27 days ago by ATpoint • 4.4k
3
votes
1
answer
112
views
1
answer
SRA toolkit (NCBI) - sra to fasta
ncbi fasta toolkit sequence sri written 28 days ago by t.kranenburg • 30 • updated 28 days ago by sangram_keshari • 30
5
votes
2
answers
209
views
2
answers
Edit FASTA header to add organism name after the accession number using perl or sed.
perl fasta sed written 4 weeks ago by MB • 0
59
votes
10
answers
8.3k
views
16 follow
10
answers
Counting N'S Within Fasta
fasta perl counts written 6.2 years ago by PoGibas ♦ 4.7k • updated 4 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
153
views
1
answer
Unable to retrieve Fasta of certain NCBI entries given their accession number
perl ncbi accession number fasta written 4 weeks ago by erans995 • 0 • updated 4 weeks ago by genomax ♦ 49k
7
votes
4
answers
174
views
4
answers
Parsing dataframe and sort a fasta file
fasta python pandas written 4 weeks ago by Toto26 • 10 • updated 4 weeks ago by Bastien Hervé • 1.3k
0
votes
1
answer
151
views
1
answer
Trying to Identify larger indels from NGS data, FASTQ format
rad-seq fasta ngs fastq dna written 5 weeks ago by alice_pieplow • 0 • updated 5 weeks ago by Kevin Blighe ♦ 21k
1
vote
1
answer
106
views
1
answer
Getting GI number from NCBI database through code
ncbi fasta gi code accession number written 5 weeks ago by erans995 • 0
3
votes
1
answer
2.5k
views
1
answer
Change fasta header sequence ID's
fasta grep oneliner written 3.8 years ago by thhaverk • 0 • updated 5 weeks ago by Biostar ♦♦ 20
4
votes
2
answers
306
views
6 follow
2
answers
Recreate reference fasta from bam file
fasta bam reference written 6 weeks ago by Chris Miller ♦ 19k • updated 6 weeks ago by h.mon ♦ 15k
3
votes
1
answer
151
views
5 follow
1
answer
change seq name in a fasta file with a dataframe
fasta python pandas written 6 weeks ago by Toto26 • 10 • updated 6 weeks ago by Chirag Parsania • 890
5
votes
3
answers
147
views
6 follow
3
answers
mRNA to protein
fasta bioinformatics translation protein rna-seq written 7 weeks ago by Xylanaser • 10 • updated 7 weeks ago by Elisabeth Gasteiger • 1.4k
3
votes
0
answers
195
views
7 follow
0
answers
Finding pairwise alignment between two multifasta files for similarity search
fasta python alignment R written 7 weeks ago by Siddharth • 0
1
vote
1
answer
169
views
1
answer
Change NCBI fasta file headers to makeblastdb format
fasta assembly format blast headers written 8 weeks ago by chland • 0 • updated 8 weeks ago by h.mon ♦ 15k
2
votes
0
answers
103
views
0
answers
extract several fasta file with a list of ID (in order)
fasta python bio written 8 weeks ago by Toto26 • 10
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