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3
votes
2
answers
94
views
2
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get organism name from fasta file header (PYTHON)
genome fasta sequence written 11 days ago by biohacker_tobe • 40 • updated 11 days ago by Joe ♦ 18k
1
vote
1
answer
59
views
1
answer
Mapping of CDS sequence of genes using minimap2
minimap2 fasta mapping cds written 13 days ago by harisanjanas • 0 • updated 13 days ago by lieven.sterck ♦ 8.5k
1
vote
1
answer
136
views
1
answer
Python script for text matching
fasta python regex written 14 days ago by anasjamshed1994 • 20 • updated 14 days ago by fishgolden • 450
7
votes
4
answers
4.0k
views
4
answers
Modifying fasta file based on vcf information
vcf fasta reference genome written 5.3 years ago by Jautis • 290 • updated 16 days ago by skanterakis • 110
6
votes
1
answer
102
views
1
answer
NGS Sequencing Outputs
fasta illumina ngs bam fastq written 18 days ago by speycast • 0 • updated 18 days ago by genomax ♦ 90k
2
votes
1
answer
104
views
1
answer
Length of scaffolds in a FASTA file
fasta genome scaffold bash written 19 days ago by Begonia_pavonina • 20 • updated 19 days ago by cpad0112 ♦ 14k
1
vote
0
answers
109
views
0
answers
Compare many fasta-files
fasta compare snp written 21 days ago by L_LANKA • 0
4
votes
2
answers
542
views
2
answers
Tool: SEDA (SEquence DAtaset builder): a desktop tool for processing FASTA files containing DNA and protein sequences
fasta bioinformatics java sequences tool written 9 months ago by Hugo • 290
3
votes
1
answer
109
views
1
answer
edit FASTA file according to range positions
fasta bed alignment samtools written 26 days ago by Begonia_pavonina • 20
0
votes
1
answer
149
views
1
answer
I have to extract organism and host name from a NCBI .gp file but grep code is not creating something
fasta ncbi grep gp meta data written 4 weeks ago by oncelmiran6 • 0 • updated 4 weeks ago by JC ♦ 11k
5
votes
2
answers
168
views
2
answers
How to convert folder containing .fna.gz to normal files
fasta sequencing written 5 weeks ago by sankadinesh • 20 • updated 5 weeks ago by zx8754 ♦ 9.6k
0
votes
0
answers
111
views
0
answers
A piece of advice on subsetting genomes
fasta genome gff annotations blast written 5 weeks ago by Begonia_pavonina • 20
0
votes
1
answer
103
views
1
answer
Error in RGI-CARD database
software error fasta fasta.gz card written 5 weeks ago by flo21 • 0 • updated 5 weeks ago by h.mon ♦ 31k
0
votes
2
answers
150
views
2
answers
Split Fasta file and rename output files with contig names
fasta contig split written 5 weeks ago by awoods6511 • 0 • updated 5 weeks ago by JC ♦ 11k
5
votes
1
answer
118
views
6 follow
1
answer
How to correct a wrong protein extraction from FASTA file?
fasta protein extraction bash written 6 weeks ago by Audrey • 20 • updated 6 weeks ago by Shalu Jhanwar • 470
0
votes
0
answers
125
views
0
answers
Export CLANS clusters in separate multifasta files
fasta clans clustering written 11 weeks ago by hazirliver • 10 • updated 7 weeks ago by Biostar ♦♦ 20
6
votes
1
answer
220
views
1
answer
adding a sequence to a genome
fasta insert written 9 weeks ago by Assa Yeroslaviz • 1.4k
2
votes
1
answer
191
views
1
answer
Fasta Taxonomy Annotation
fasta annotation taxonomy written 12 weeks ago by zach • 10 • updated 7 weeks ago by h.mon ♦ 31k
1
vote
0
answers
152
views
0
answers
How to download CDS from ncbi for pangenome analysis?
genome fasta written 7 weeks ago by sidraas • 0 • updated 7 weeks ago by zx8754 ♦ 9.6k
2
votes
1
answer
122
views
1
answer
Replace matching sections of two fastas
fasta awk written 7 weeks ago by jamie.pike • 50 • updated 7 weeks ago by Pierre Lindenbaum ♦ 130k
3
votes
1
answer
190
views
1
answer
Changing output format for hamming distance of FASTA sequences (using Biopython)
fasta python hamming_distance biopython sequence written 8 weeks ago by nameuser • 10 • updated 7 weeks ago by Joe ♦ 18k
6
votes
1
answer
181
views
1
answer
How to remove poor quality sequences from a fasta file?
perl python bash shell fasta written 8 weeks ago by Dineshkumar K • 40
5
votes
1
answer
172
views
1
answer
How to go from a fasta file to an annotated genome assembly in genbank format?
fasta genbank genome assembly written 8 weeks ago by vixelaa • 10
1
vote
1
answer
163
views
1
answer
How to extract a range of nucleotides from a fasta file
fasta extract written 8 weeks ago by kristina.mahan • 100 • updated 8 weeks ago by RamRS ♦ 30k
1
vote
0
answers
211
views
0
answers
How to convert FASTA to NEXUS in Python
fasta nexus biopython convert written 8 weeks ago by adrian18_07 • 10
4
votes
1
answer
301
views
5 follow
1
answer
Remove duplicates from fasta keeping at least one sequence per group based on header
fasta scripting written 9 weeks ago by vixelaa • 10
6
votes
2
answers
160
views
2
answers
Incorrect sequence retrieved by coordinates
fasta python biopython pysam written 9 weeks ago by Igor Filippov • 0 • updated 9 weeks ago by Istvan Albert ♦♦ 85k
0
votes
0
answers
94
views
0
answers
Obtaining FASTA format from blastp output
fasta blast written 10 weeks ago by mbrav005 • 0
0
votes
1
answer
88
views
1
answer
Merge .ffn files into one .fasta file
fasta ffn written 10 weeks ago by alexa.fitzpatrick • 0
0
votes
0
answers
99
views
0
answers
Is Whole Genome Fasta same for ensemble and knowgene annotation?
genome fasta rna-seq written 10 weeks ago by donny.dw • 10
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