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<prev • 942 results • page 1 of 32 • next >
4
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0
answers
389
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5 follow
0
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grep/awk issue: can't extract sequences from a fasta file
fasta extraction sequence grep shell written 5 months ago by benoit.kunath • 10 • updated 1 day ago by Biostar ♦♦ 20
57
votes
12
answers
8.4k
views
17 follow
12
answers
Choosing Random Set Of Seqs From Larger Set
fasta random written 6.7 years ago by razor • 160 • updated 2 days ago by mdtoney • 0
24
votes
7
answers
8.3k
views
10 follow
7
answers
Remove duplicates in fasta file based on ID
fasta sed sort written 3.5 years ago by oliver.bayfield • 110 • updated 4 days ago by michau • 10
167
votes
21
answers
46k
views
70 follow
21
answers
How To Remove The Same Sequences In The Fasta Files?
fasta duplicates sequence written 8.1 years ago by Zhangleisdau • 270 • updated 4 days ago by michau • 10
13
votes
3
answers
234
views
7 follow
3
answers
Tool to fix reference allele nucleotide in vcf
vcf fasta pony written 14 days ago by WouterDeCoster ♦ 34k • updated 4 days ago by finswimmer ♦ 6.9k
1
vote
1
answer
5.7k
views
1
answer
Psiblast Fasta Formatted Output
fasta blast+ written 5.0 years ago by Reyhaneh • 480 • updated 13 days ago by Biostar ♦♦ 20
0
votes
1
answer
133
views
1
answer
How download a sequence fasta from PDB using biopython / python?
fasta written 13 days ago by thayana.vt • 0 • updated 13 days ago by Pierre Lindenbaum ♦ 114k
6
votes
2
answers
94
views
2
answers
How do concatenate different fasta file
fasta concatenate written 14 days ago by lkianmehr • 30 • updated 14 days ago by Nicolas Rosewick ♦ 6.9k
3
votes
1
answer
279
views
1
answer
how to add the sample name to the end read headers
fasta header relablel written 11 weeks ago by juan.galarza • 0 • updated 14 days ago by Biostar ♦♦ 20
3
votes
1
answer
143
views
1
answer
Separate fasta file for each locus
fasta radseq awk written 15 days ago by NM • 0
0
votes
0
answers
90
views
0
answers
How do I find a short protein sequence on python with fasta file from uniprot ?
fasta python protein sequence sequence written 18 days ago by biobio • 0 • updated 18 days ago by Pierre Lindenbaum ♦ 114k
3
votes
1
answer
126
views
1
answer
Filter a large fasta or fastq by a query sequence, with parameterized fuzzy matching
fasta fastq filtering written 18 days ago by ovon • 20 • updated 18 days ago by finswimmer ♦ 6.9k
3
votes
4
answers
2.3k
views
4
answers
Extract sequence from fasta using primer
fasta extract primer pcr written 2.1 years ago by sacha • 1.6k • updated 21 days ago by m.schmitt • 0
2
votes
0
answers
108
views
0
answers
Extracting specific regions from a bam file and exporting them to do a phylogenetic analysis
phylogenetic fasta bam samtools geneious written 21 days ago by Badh2 • 0
5
votes
4
answers
169
views
5 follow
4
answers
How to reformat (i.e. to clean) NCBI .fasta archives into a singleline .fasta with only the unique identifier before each seqeunce?
ncbi fasta linux bash written 5 weeks ago by johnnytam100 • 90 • updated 4 weeks ago by Chirag Parsania • 1.2k
0
votes
1
answer
162
views
7 follow
1
answer
How can I make a .bed file from my fasta?
fasta bed mapping bowtie2 written 4 weeks ago by jaqx008 • 40
5
votes
2
answers
145
views
7 follow
2
answers
Faster way to get sequences from large fasta files?
fasta grep paired-ends written 4 weeks ago by emilywynn6 • 0 • updated 4 weeks ago by mike-zx • 110
6
votes
2
answers
137
views
2
answers
Extract sequence ID from Fasta for a given sequence
fasta written 4 weeks ago by MAPK • 1.3k • updated 4 weeks ago by michael.ante • 2.7k
47
votes
6
answers
21k
views
12 follow
6
answers
Sequence length from Fasta
fasta written 4.0 years ago by bongbang • 70 • updated 4 weeks ago by mg • 20
1
vote
1
answer
97
views
1
answer
Fasta length does not match Ensembl info
fasta annotation written 5 weeks ago by rmf • 440 • updated 5 weeks ago by Nicolas Rosewick ♦ 6.9k
1
vote
1
answer
123
views
1
answer
Trouble installing and creating database for blast
fasta ubuntu blast written 5 weeks ago by asidhu • 0 • updated 5 weeks ago by Vijay Lakhujani ♦ 3.2k
17
votes
1
answer
2.6k
views
1
answer
Tool: SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
fasta fastq seqkit tool written 2.1 years ago by shenwei356 ♦ 4.2k • updated 5 weeks ago by bio_d • 0
282
votes
27
answers
11k
views
30 follow
27
answers
Mean Length Of Fasta Sequences
fasta codegolf sequence code written 8.3 years ago by Eric Normandeau ♦ 10.0k • updated 6 weeks ago by Jeremy Leipzig ♦ 18k
105
votes
15
answers
7.8k
views
22 follow
15
answers
Digesting Fasta Sequences Into A Set Of Smaller Sequences
fasta codegolf sequence code written 8.3 years ago by Eric Normandeau ♦ 10.0k • updated 6 weeks ago by zx8754 ♦ 5.7k
2
votes
2
answers
199
views
6 follow
2
answers
Extract a subset of fasta file based on header in python
fasta python written 6 weeks ago by xupbuy • 0 • updated 6 weeks ago by Siya Diya • 0
3
votes
1
answer
139
views
1
answer
Converting a single line fasta transcriptome [no space between sequence and name] to conventional fasta format
genome fasta next-gen sequence rna-seq written 7 weeks ago by Roelof • 10 • updated 7 weeks ago by Pierre Lindenbaum ♦ 114k
5
votes
1
answer
128
views
1
answer
should FASTA files be sorted before indexed with SAMtools?
fasta sort samtools index written 7 weeks ago by Timze W • 20 • updated 7 weeks ago by finswimmer ♦ 6.9k
4
votes
2
answers
211
views
5 follow
2
answers
Orthomcl clusters to fasta
ortho mcl alignment cluster fasta written 8 weeks ago by wocana • 10 • updated 8 weeks ago by RamRS ♦ 19k
5
votes
1
answer
1.1k
views
1
answer
How to rename chromosome names in GTF file?
gtf fasta annotation genome written 14 months ago by cristian • 180 • updated 8 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
171
views
1
answer
Count the number of sequences in fasta file using perl
perl bioinformatics bioperl fasta written 8 weeks ago by koushikayaluri • 10 • updated 8 weeks ago by ivan.antonov • 50
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