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Showing: fasta • reset
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3
votes
2
answers
53
views
2
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mRNA to protein
fasta bioinformatics translation protein rna-seq written 9 hours ago by Xylanaser • 10 • updated 8 hours ago by h.mon ♦ 13k
3
votes
0
answers
103
views
7 follow
0
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Finding pairwise alignment between two multifasta files for similarity search
fasta python alignment R written 10 hours ago by Siddharth • 0
1
vote
1
answer
96
views
1
answer
Change NCBI fasta file headers to makeblastdb format
fasta assembly format blast headers written 1 day ago by chland • 0 • updated 1 day ago by h.mon ♦ 13k
1
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0
answers
63
views
0
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extract several fasta file with a list of ID (in order)
fasta python bio written 1 day ago by Toto26 • 10
1
vote
0
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50
views
0
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get size information from an OTU table into a fastafile for use in USEARCH/VSEARCH
fasta header otu table written 1 day ago by EBP91 • 0
1
vote
0
answers
90
views
0
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fastq Files processing
fasta fastqfiles dna-seq fastq written 2 days ago by emadelhewihy • 0
0
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0
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81
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0
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Mapping with Fasta vs fastq
fasta bowtie1 command fastq mapping written 3 days ago by jaqx008 • 10 • updated 3 days ago by genomax ♦ 46k
6
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0
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96
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0
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5 FAsta file input and showing result using nested loop
fasta R databanks alignment sequencing written 4 days ago by mubarakkham2016 • 0
1
vote
1
answer
89
views
1
answer
bedtools getfasta (how to get only cds coding sequence)
mac fasta gff written 5 days ago by benjamin • 0
0
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0
answers
68
views
0
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best CDS prediction tool for online annotation submission
fasta annotation ghostkoala prodigal cds written 9 days ago by willnotburn • 20
2
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3
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144
views
3
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Read a fasta file | Java
fasta java file written 12 days ago by ozdavidd • 0 • updated 10 days ago by hlfzeus • 110
4
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2
answers
119
views
2
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The efficient way to generate fasta and bed files
fasta python bed written 13 days ago by elisheva • 70
67
votes
11
answers
39k
views
35 follow
11
answers
How To Extract A Sequence From A Big (6Gb) Multifasta File ?
fasta written 5.8 years ago by Mchimich • 250 • updated 15 days ago by Ezra Kitson • 10
3
votes
3
answers
130
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5 follow
3
answers
randomly sample sequences of fasta file per sample name
fasta sequence random written 16 days ago by nmkn • 0 • updated 16 days ago by cpad0112 • 4.5k
5
votes
3
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141
views
3
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Cannot get efetch to download genome - what is wrong?
genome fasta efetch entrez written 22 days ago by BioBing • 90 • updated 22 days ago by h.mon ♦ 13k
2
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0
answers
89
views
0
answers
Removing a chromosome from a fasta file
fasta chromosome sequence written 22 days ago by t86dan • 0
0
votes
1
answer
225
views
1
answer
Create fasta of matched sequences with gaps
gene alignment nucleotides blast fasta written 12 weeks ago by kingcohn • 20 • updated 28 days ago by lieven.sterck • 1.2k
5
votes
1
answer
164
views
1
answer
Select records from fasta file by SeqIO (Biopython)
fasta sequence biopython seqio written 4 weeks ago by dmitri.ivanovsky • 0 • updated 4 weeks ago by a.zielezinski ♦ 8.2k
1
vote
1
answer
103
views
1
answer
Makeblastdb Issue Buffer Overflow
fasta database blast written 4 weeks ago by Giovanni.madrigal12 • 10 • updated 4 weeks ago by genomax ♦ 46k
2
votes
1
answer
105
views
1
answer
How to get all known human transcript isoforms in fasta format?
fasta rna-seq transcripts written 4 weeks ago by Venados • 0
2
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0
answers
109
views
0
answers
Generation of Consenses Fasta from SAM/BAM
fasta ngs bam misa sam written 4 weeks ago by mail2steff • 30
3
votes
2
answers
126
views
2
answers
Extracting subsequence from FASTA file using python
fasta python sequence written 5 weeks ago by shawnt1234 • 0 • updated 5 weeks ago by Bastien Hervé • 610
1
vote
1
answer
221
views
1
answer
How to parse a dat file into FASTA format?
fasta dat file biopython uniprot written 5 weeks ago by yuevine • 0 • updated 5 weeks ago by Elisabeth Gasteiger • 1.4k
0
votes
1
answer
163
views
1
answer
sort FASTA file into table
fasta bioinformatics bash written 5 weeks ago by a.bolbukova.12 • 0 • updated 5 weeks ago by Pierre Lindenbaum ♦ 106k
3
votes
1
answer
108
views
1
answer
How to replace a stretch of a sequence with N's in a fasta file
fasta biopython written 5 weeks ago by Grinch • 10 • updated 5 weeks ago by h.mon ♦ 13k
3
votes
1
answer
136
views
1
answer
fastq to fasta conversion
fasta fastq go written 5 weeks ago by monicasteffi • 0 • updated 5 weeks ago by Vijay Lakhujani • 1.9k
0
votes
0
answers
92
views
0
answers
bioperl fasta indexing problem with non model genome sequence
mrna fasta bioperl reference index written 6 weeks ago by shreyasibiswas88 • 30
2
votes
3
answers
254
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6 follow
3
answers
Faster way to get GC content and Coverage from .fasta
genome fasta next-gen sequencing bash written 8 weeks ago by danilo.tatoni • 30 • updated 6 weeks ago by cpad0112 • 4.5k
0
votes
2
answers
149
views
2
answers
Changing names of Fasta headers
fasta sequence sed unix bash loop written 6 weeks ago by tpaisie • 70 • updated 6 weeks ago by cpad0112 • 4.5k
1
vote
1
answer
219
views
1
answer
How to convert bam into fasta with chromosome name in fasta file having consensus sequences in fasta file
fasta bam written 6 weeks ago by Kritika • 250
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