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3
votes
1
answer
133
views
1
answer
Extract dna sequences from given ids using R codes/package
fasta R written 2 days ago by MAPK • 1.0k • updated 1 day ago by Jean-Karim Heriche ♦ 13k
3
votes
2
answers
981
views
2
answers
Challenge: Convert GenBank to Fasta without bioperl, without emboss, or any other dependencies
fasta file-format conversion genbank written 23 months ago by Lee Katz • 2.8k • updated 3 days ago by Biostar ♦♦ 20
5
votes
0
answers
180
views
0
answers
How to rename chromosome names in GTF file?
gtf fasta annotation genome written 4 days ago by cristian • 80
1
vote
2
answers
307
views
2
answers
How to extract fasta sequences from assembled transcripts generated by Stringtie
fasta gtf file stringtie sequences written 4 months ago by seta • 920 • updated 6 days ago by Vijay Lakhujani • 1.2k
0
votes
1
answer
124
views
1
answer
Consensus by aligning and extending the sequences
fasta alignment msa written 12 days ago by sbdk82 • 30 • updated 12 days ago by h.mon ♦ 8.7k
1
vote
1
answer
151
views
1
answer
Extract pairs of sequences from a fasta file based on a CSV list of headers
fasta extract written 13 days ago by ajsakla • 0 • updated 13 days ago by st.ph.n • 1.6k
25
votes
7
answers
14k
views
19 follow
7
answers
Extract Sequence From Fasta File Using Ids From A Separate File
fasta written 4.2 years ago by IsmailM • 80 • updated 14 days ago by BPors • 10
0
votes
0
answers
121
views
0
answers
read simulation and quantification
fasta simulation quantification rna-seq written 14 days ago by snishtala03 • 0
80
votes
8
answers
46k
views
31 follow
8
answers
Useful Bash Commands To Handle Fasta Files
fasta list command-line bash written 5.6 years ago by Anima Mundi • 2.1k • updated 16 days ago by Kevin Blighe • 1.4k
0
votes
0
answers
102
views
0
answers
Simple way to extract or mask specific sites only from multi-FASTA alignments
bedtools fasta snp seqtk written 17 days ago by Kame • 10
2
votes
1
answer
142
views
1
answer
Import the quality scores from a FASTQ file in Python 3 Biopython
fasta python3 fastq biopython quality written 18 days ago by cristian • 80 • updated 18 days ago by Vijay Lakhujani • 1.2k
0
votes
1
answer
154
views
1
answer
extracting fasta sequence from aligned reads
fasta bam rna-seq written 23 days ago by amoltej • 80 • updated 21 days ago by h.mon ♦ 8.7k
2
votes
1
answer
168
views
1
answer
How to change Bioperl's Bio::SeqIO default sequence folding?
fasta fastq bioperl written 27 days ago by predeus • 360 • updated 27 days ago by Chris Fields • 1.8k
9
votes
2
answers
172
views
5 follow
2
answers
Rename fasta headers
fasta written 29 days ago by davkam30 • 10 • updated 29 days ago by cpad0112 • 1.9k
1
vote
2
answers
200
views
2
answers
Consensus fasta file with uncovered bases set to Ns
genome bed consensus reference fasta written 4 weeks ago by deepti1rao • 0 • updated 4 weeks ago by Matt Shirley ♦ 7.8k
6
votes
1
answer
248
views
5 follow
1
answer
Parse fasta header with regex in python
fasta python biopython regex written 4 weeks ago by David • 60 • updated 4 weeks ago by a.zielezinski ♦ 7.3k
1
vote
1
answer
270
views
1
answer
Extract consensus dna sequence of multiple genes from multiple bam files in fasta format
fasta consensus genes samtools bam written 6 weeks ago by bioinfo8 • 90
8
votes
2
answers
407
views
2
answers
Add filename to fasta headers of multiple fasta files inside loop
fasta pyfasta header gene bash written 5 weeks ago by bioinfo8 • 90
3
votes
3
answers
349
views
3
answers
faidx implementation with C++
fasta indexing c++ written 5 weeks ago by bdelolmo • 10 • updated 5 weeks ago by Matt Shirley ♦ 7.8k
12
votes
5
answers
1.9k
views
5 follow
5
answers
How to extract contigs from FASTA file which contains specific sequence
fasta find extraction contig written 2.7 years ago by Paul • 700 • updated 5 weeks ago by Brian Bushnell ♦ 14k
3
votes
1
answer
487
views
1
answer
How to slice or trim DNA sequence when it encounters NNNN or letters that represent ambiguity in the sequence?
genome fasta tools sequence software written 11 months ago by allyson1115ar • 10 • updated 5 weeks ago by Biostar ♦♦ 20
7
votes
1
answer
278
views
1
answer
Can 167 contigs in my genome be stitched in to one fasta sequence
fasta genome contigs bioinformatics written 7 weeks ago by Optimist • 20 • updated 7 weeks ago by Michael Dondrup ♦ 43k
3
votes
0
answers
243
views
0
answers
MIRA: Assembly from fasta file with identical names
fasta assembly mira written 7 weeks ago by Tamandua • 0
0
votes
2
answers
171
views
2
answers
Ribo-seq rRNA and other contaminants Fasta file for S. pombe
fasta ribo-seq rrna cleaning pombe written 7 weeks ago by hdmagpantay • 0 • updated 7 weeks ago by genomax ♦ 33k
3
votes
3
answers
315
views
5 follow
3
answers
change specific bases in a fasta file
fasta biopython written 7 weeks ago by samuel.lipworth • 10
3
votes
3
answers
387
views
6 follow
3
answers
How to get fasta sequences of features from a GFF3 file?
gff3 fasta parser written 7 weeks ago by Lina F • 100 • updated 7 weeks ago by Matt Shirley ♦ 7.8k
3
votes
1
answer
313
views
1
answer
NCBI vs ENSEMBL FASTA
genome fasta sequence refseq ensembl written 3 months ago by uki_al • 20 • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
155
views
0
answers
Incorporating Ensembl and Fasta Data
fasta genome sequence ensembl written 8 weeks ago by sacamanobob800 • 0 • updated 8 weeks ago by Emily_Ensembl ♦ 13k
16
votes
1
answer
2.6k
views
1
answer
Can Biopython Properly Import Fasta Headers With Spaces In Them?
fasta python biopython written 5.5 years ago by David M • 520 • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
182
views
1
answer
Exporting fasta from SQL
fasta format sql written 8 weeks ago by stacy734 • 20
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