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1
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1
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104
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bcftools to remove non-variants sites
vcf filter bctools vcftools snp written 5 weeks ago by shiy05 • 0
1
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1
answer
134
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1
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Bcftools filter error
filter bcftools written 6 weeks ago by BAGeno • 170
27
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2
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20k
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14 follow
2
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How To Filter Bam File
filter written 9.7 years ago by Junfeng • 330 • updated 9 weeks ago by Biostar ♦♦ 20
4
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1
answer
309
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1
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Use bcftools to filter a VCF with multiple filter flags
vcf filter bcftols written 11 weeks ago by RamRS ♦ 30k
3
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1
answer
153
views
1
answer
Filter data frame with dplyr
R dplyr filter written 12 weeks ago by luca • 20 • updated 12 weeks ago by rpolicastro • 2.1k
17
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7
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6.0k
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7
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extract and generate a VCF file with only "PASS"
vcf filter written 4.2 years ago by zengtony743 • 70 • updated 4 months ago by carmen.bugarin.diz • 10
0
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1
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186
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1
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Filter Agilent Data
giswellabovebg alignment filter written 5 months ago by j_jamal96 • 0
0
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0
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189
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0
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Make a bed file to exclude 1Mb from start and end of contigs
genome filter mask bed written 7 months ago by Rubal • 330 • updated 5 months ago by Biostar ♦♦ 20
2
votes
1
answer
144
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1
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filter multisample VCF based on Altered AD values
vcf filter ad written 5 months ago by cocchi.e89 • 110 • updated 5 months ago by Pierre Lindenbaum ♦ 131k
0
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0
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176
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0
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Filter SNPs for DP using mean + 2*SD
filter next-gen vcftools snp depth written 6 months ago by QPaps04 • 10
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0
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246
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5 follow
0
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Keep the paired reads whose length less than 400,000 bp
filter alignment sam rna-seq bam written 6 months ago by ek699 • 0
3
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0
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475
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0
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vcf filter for FORMAT argument (DP/GQ/GQX > 30) multiple (380) vcf file
vcf filter sequencing vcftool written 7 months ago by IndyDNA • 10
0
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2
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246
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2
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Filter SNPs in multiple-sample vcf based on the snps of two samples
vcf filter bash snp linux written 9 months ago by QPaps04 • 10
2
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2
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295
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2
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vcftools separate only selected chrom allocation from 4gb vcf file
vcf filter allocation vcftools written 9 months ago by dev.info.2021 • 0
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0
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1.4k
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0
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Snpsift filtering for exon intron
filter snipsift written 5.6 years ago by basalganglia • 40 • updated 10 months ago by Biostar ♦♦ 20
3
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1
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1.7k
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1
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Strange Behavior Filtering Reads With Samtools
filter bam samtools written 9.0 years ago by Linda • 160 • updated 14 months ago by Biostar ♦♦ 20
2
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1
answer
351
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1
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Different results between two methods for the extraction of SNPs, common for a subgroup from a multiVCF file
snpsift filter ngs snp multivcf written 14 months ago by pavlo.maksimov • 20
2
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0
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356
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0
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Working with redundant information on BLAST output
filter python blast dictionary written 15 months ago by flogin • 250
0
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2
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720
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2
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Filter nanopore fastq files by start time
filter fastq nanopore start time written 15 months ago by sendhelp • 0 • updated 15 months ago by genomax ♦ 91k
1
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1
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363
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1
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filter transcript isoforms with low support
filter rna-seq assembly written 16 months ago by ignazio.fontana • 0 • updated 16 months ago by kristoffer.vittingseerup • 3.4k
0
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1
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1.7k
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1
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vcf filtering and query
vcf filter query written 5.0 years ago by joaofadista • 50 • updated 17 months ago by Biostar ♦♦ 20
3
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0
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696
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5 follow
0
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BCF Tools Filter on 1000Genomes Annotation
annotation bcftools vcftools filter written 18 months ago by jon.klonowski • 70
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2
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2.5k
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5 follow
2
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How to filter sequencing reads in a fastq file by size?
ribo-seq fastq size rna-seq filter written 18 months ago by Beginner • 40 • updated 18 months ago by emeline.a.favreau • 30
1
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1
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1.1k
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1
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Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 19 months ago by nute11a • 20 • updated 19 months ago by Istvan Albert ♦♦ 85k
2
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0
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354
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0
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Filter read level data after RNA-seq alignment
reads filter alignment rna-seq written 20 months ago by mohammedtoufiq91 • 110
0
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0
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1.1k
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0
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Filtering Read Quality - Cant remove all reads that have a single base below a threshold
filter fastx quality-score sequencing written 23 months ago by tbb21 • 10 • updated 20 months ago by Biostar ♦♦ 20
3
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1
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565
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1
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filter gene expression matrix
filter gene expression written 21 months ago by Sam • 140 • updated 21 months ago by finswimmer ♦ 14k
6
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0
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580
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0
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Sequence identity between sequences with different lengths
sequence filter mummer alignment identity written 21 months ago by ricardoguerreiro2121 • 60 • updated 21 months ago by Bastien Hervé ♦ 4.8k
24
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3
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12k
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7 follow
3
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Filtering Paired End Reads
filter fastq fastx written 10.3 years ago by brentp ♦ 23k • updated 21 months ago by Biostar ♦♦ 20
7
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2
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1.7k
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2
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1000Genome SV integrated map's power for SV filter
filter 1000 genome project structural variation written 4.6 years ago by michealsmith • 750 • updated 23 months ago by LGMgeo • 90
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