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<prev • 142 results • page 1 of 5 • next >
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vcf filtering and query
vcf filter query written 3.6 years ago by joaofadista • 50 • updated 4 weeks ago by Biostar ♦♦ 20
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192
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BCF Tools Filter on 1000Genomes Annotation
annotation bcftools vcftools filter written 8 weeks ago by jon.klonowski • 10
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2
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270
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2
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How to filter sequencing reads in a fastq file by size?
ribo-seq fastq size rna-seq filter written 9 weeks ago by Beginner • 0 • updated 8 weeks ago by emeline.a.favreau • 20
1
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1
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214
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1
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Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 10 weeks ago by nute11a • 0 • updated 10 weeks ago by Istvan Albert ♦♦ 80k
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136
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Filter read level data after RNA-seq alignment
reads filter alignment rna-seq written 3 months ago by mohammedtoufiq91 • 40
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413
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Filtering Read Quality - Cant remove all reads that have a single base below a threshold
filter fastx quality-score sequencing written 6 months ago by tbb21 • 10 • updated 4 months ago by Biostar ♦♦ 20
3
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1
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202
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1
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filter gene expression matrix
filter gene expression written 4 months ago by Sam • 110 • updated 4 months ago by finswimmer ♦ 11k
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0
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174
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Sequence identity between sequences with different lengths
sequence filter mummer alignment identity written 4 months ago by ricardoguerreiro2121 • 20 • updated 4 months ago by Bastien Hervé ♦ 4.3k
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11k
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7 follow
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Filtering Paired End Reads
filter fastq fastx written 8.9 years ago by brentp ♦ 23k • updated 4 months ago by Biostar ♦♦ 20
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1000Genome SV integrated map's power for SV filter
filter 1000 genome project structural variation written 3.2 years ago by michealsmith • 740 • updated 6 months ago by LGMgeo • 90
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381
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bcftools filtering INFO column issues (empty output)
vcf filter bcftools missing info written 6 months ago by Molly_K • 60
12
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3
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1.5k
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3
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Remove a list of positions form a VCF file
vcf filter snp written 2.6 years ago by shinken123 • 80 • updated 6 months ago by zx8754 ♦ 7.5k
1
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1
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193
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Using repeat region filter post QC
exome filter ngs repeats written 7 months ago by zx8754 ♦ 7.5k • updated 7 months ago by Pierre Lindenbaum ♦ 120k
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147
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Simultaneous vs sequential marker filters
filter order snp written 7 months ago by zvezdoma • 0
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211
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basic command in bash
filter grep rna-seq written 7 months ago by luzglongoria • 20
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235
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Filtering SAM file based on column numbers
filter alignment sam written 7 months ago by elena.syp • 0 • updated 7 months ago by Pierre Lindenbaum ♦ 120k
16
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3
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2.9k
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3
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A Grep For Gene Ontology ?
gene filter written 9.2 years ago by Pierre Lindenbaum ♦ 120k • updated 9 months ago by RamRS ♦ 21k
1
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1
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261
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1
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Using one bam file with huge coverage, How to generate several bam files with different coverage
filter snps caller bam written 9 months ago by tarek.mohamed • 250 • updated 9 months ago by WouterDeCoster ♦ 39k
3
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1
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391
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1
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Error while trying to filter a .vcf.gz file with a bed.gz file
filter error bed file bed written 9 months ago by ricfoz • 30 • updated 9 months ago by RamRS ♦ 21k
1
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1
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241
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1
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GEO search filtering
geo rnaseq filter written 10 months ago by cilgaiscan • 50 • updated 10 months ago by btsui • 290
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1
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373
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1
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Filter Alt Reads from BAM at List of Known Het Sites
reads filter bam written 10 months ago by alongalor • 0
6
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1
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645
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1
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(Sanity check) Too many SNPs?
filter next-gen variant written 19 months ago by rightmirem • 60 • updated 11 months ago by Biostar ♦♦ 20
3
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1
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464
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1
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Extracting Cumulative (Rare) Allele Frequencies for a Subset of Variants From a VCF
vcf filter rare variant tests enrichment written 11 months ago by maegsul • 140 • updated 11 months ago by Pierre Lindenbaum ♦ 120k
0
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503
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GOexpress analysis, removing genes with a score of 0?
goexpress filter expressio set rna-seq remove written 11 months ago by draper • 0
6
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2
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416
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5 follow
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Filter sam/bam files
filter bam samtools sam gbs written 11 months ago by ramesh.8v • 200 • updated 11 months ago by swbarnes2 ♦ 5.8k
1
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1
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385
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1
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Filtering reads on the basis of percentage of ambiguous(N's) characters
filter fastq rna-seq written 12 months ago by Varun Gupta • 1.1k • updated 12 months ago by Pierre Lindenbaum ♦ 120k
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2
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Extracting genotypes and filtering from a VCF file containing multiple exomes of families
vcf filter exome dna-seq genotype written 12 months ago by gradstudentNew • 10 • updated 12 months ago by Pierre Lindenbaum ♦ 120k
2
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2
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332
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2
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Filtering GO terms by neuromuscular processes
filter interactions disease go protein written 13 months ago by Swimming bird • 10 • updated 12 months ago by jean.elbers • 1.1k
2
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1
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249
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1
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Using the ranking value to filter
discosnp++ discosnp rna-seq variantcalling filter written 14 months ago by vguerracanedo • 10 • updated 14 months ago by pierre.peterlongo • 840
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How to filter VCF where at least x% of the individuals have DP>=10 and GQ>=20
vcf filter gatk written 16 months ago by hellbio • 370 • updated 16 months ago by Pierre Lindenbaum ♦ 120k
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