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<prev • 105 results • page 1 of 4 • next >
0
votes
1
answer
165
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1
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Filtering by specific genotype VCF
vcf filter genotype written 9 weeks ago by virpatel3 • 20 • updated 10 days ago by agata88 • 610
0
votes
1
answer
198
views
1
answer
Maximum Depth Filter
vcf filter maximum depth written 20 days ago by ATPoint • 710 • updated 20 days ago by Pierre Lindenbaum ♦ 96k
0
votes
1
answer
223
views
1
answer
Filter SNPs on depth
filter depth vcftools snp mindp written 7 weeks ago by Covux • 10 • updated 7 weeks ago by Istvan Albert ♦♦ 73k
0
votes
1
answer
264
views
1
answer
Filter pileup file for completeness
filter samtools completeness pileup written 11 months ago by AP • 60
3
votes
2
answers
323
views
6 follow
2
answers
filtering out reads from bam file
gff3 filter bam rna-seq written 4 months ago by sgmiriuka • 0 • updated 4 months ago by Alex Reynolds ♦ 20k
0
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0
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194
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0
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Filter FASTQ by length job "currently running" for 24+ hrs. (in Galaxy)
filter fastq stuck written 4 months ago by Wowbaggerz • 0
2
votes
1
answer
220
views
1
answer
bamtools filter specific motif sequence
filter motif bamtools written 5 months ago by devin.porter92 • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 96k
8
votes
0
answers
413
views
0
answers
Tool: Sequence filtration tool
fasta filter sequence tool written 5 months ago by Eslam Samir • 90
1
vote
1
answer
766
views
1
answer
filter multiple VCF files using snpSift
snpsift filter vcf written 22 months ago by jan • 60 • updated 6 months ago by Biostar ♦♦ 20
16
votes
3
answers
2.0k
views
3
answers
A Grep For Gene Ontology ?
gene filter written 7.4 years ago by Pierre Lindenbaum ♦ 96k • updated 7 months ago by Biostar ♦♦ 20
1
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0
answers
340
views
0
answers
Filter local BLAST DB by organism
filter database blast written 8 months ago by daniello • 0 • updated 7 months ago by Biostar ♦♦ 20
4
votes
2
answers
416
views
2
answers
Filtering out the variants annotated as "FILTER" from vcf file using GATK
vcf gatk snp filter written 7 months ago by Vijay Lakhujani • 1.1k • updated 7 months ago by Pierre Lindenbaum ♦ 96k
0
votes
0
answers
262
views
0
answers
VCFtools filter missing genotypes conditional on a factor (population, species, etc.)
rad filter ngs vcftools written 7 months ago by beausoleilmo • 100
5
votes
2
answers
285
views
2
answers
How to simply filter a xml file?
filter blast xml written 7 months ago by haro • 150 • updated 7 months ago by Alex Reynolds ♦ 20k
0
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0
answers
269
views
0
answers
Down-sample to one read per SNP loci per sample
low coverage down-sample bam snp filter written 8 months ago by aylward.megan • 0
1
vote
0
answers
433
views
0
answers
How to "filter_low_expr_transcripts"?
filter transcripts rna-seq low expression written 8 months ago by tcf.hcdg • 40
1
vote
3
answers
454
views
3
answers
bcftools filter or bcftools isec to EXCLUDE dbSNP snps
filter bcftools vcftools isec dbsnp written 10 months ago by bgold04 • 0 • updated 10 months ago by harold.smith.tarheel • 3.7k
1
vote
2
answers
352
views
2
answers
Question: Samtools Select SAM Flag for unpaired uniquely reads
filter samtools view written 11 months ago by lexi • 0
0
votes
0
answers
288
views
0
answers
Cytoscape, select/filter multpile ID
filter cytoscape written 11 months ago by Maciej Jończyk • 590
1
vote
0
answers
515
views
0
answers
Help to filter blastp results
fasta filter blast written 11 months ago by guillaume.rbt • 300
0
votes
1
answer
335
views
1
answer
FIlter in Galaxy for string with wildcards
galaxy filter snps variant written 11 months ago by techdemonstrations • 0 • updated 11 months ago by Devon Ryan ♦ 70k
0
votes
0
answers
390
views
0
answers
Remove a gene with multiple variants after snpEff annotation (VCF file)
vcf filter multiple variants in one gene written 12 months ago by zengtony743 • 60
4
votes
4
answers
539
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4
answers
Filter Fasta using regexp on header
fasta filter header regexp written 12 months ago by sacha • 780 • updated 12 months ago by shenwei356 • 3.2k
6
votes
2
answers
518
views
2
answers
extract and generate a VCF file with only "PASS"
vcf filter written 12 months ago by zengtony743 • 60 • updated 12 months ago by Vivek • 1.9k
1
vote
1
answer
675
views
1
answer
vcftools does not filter by GQ
filter gq vcftools written 14 months ago by AP • 60
0
votes
1
answer
422
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1
answer
Filtering SNPs from a multi sequence alignment
filter multiple sequence alignment snp written 15 months ago by natasha • 0 • updated 15 months ago by Brice Sarver • 2.3k
4
votes
1
answer
477
views
1
answer
Retrieve only BLAST hit sequences from a de novo transcriptome
filter rna-seq transcriptome written 15 months ago by Cristian Vergara • 20 • updated 15 months ago by natasha.sernova • 2.5k
6
votes
1
answer
563
views
1
answer
1000Genome SV integrated map's power for SV filter
filter 1000 genome project structural variation written 16 months ago by gerrybio2010 • 710 • updated 15 months ago by QVINTVS_FABIVS_MAXIMVS • 1.9k
1
vote
0
answers
857
views
0
answers
tools for Reciprocal BLAST hit processing
filter reciprocal blast script written 16 months ago by Anand Rao • 70
4
votes
3
answers
1.0k
views
3
answers
bcftools filter applied to specific sample column
filter bcftools view written 16 months ago by skanterakis • 50
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