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1
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GEO search filtering
geo rnaseq filter written 3 days ago by cilgaiscan • 20 • updated 3 days ago by btsui • 190
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1
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106
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1
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Filter Alt Reads from BAM at List of Known Het Sites
reads filter bam written 13 days ago by alongalor • 0
6
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1
answer
423
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1
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(Sanity check) Too many SNPs?
filter next-gen variant written 9 months ago by rightmirem • 50 • updated 5 weeks ago by Biostar ♦♦ 20
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2
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932
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2
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1000Genome SV integrated map's power for SV filter
filter 1000 genome project structural variation written 2.4 years ago by michealsmith • 740 • updated 6 weeks ago by LGMgeo • 90
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1
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131
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1
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Extracting Cumulative (Rare) Allele Frequencies for a Subset of Variants From a VCF
vcf filter rare variant tests enrichment written 6 weeks ago by maegsul • 110 • updated 6 weeks ago by Pierre Lindenbaum ♦ 111k
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142
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GOexpress analysis, removing genes with a score of 0?
goexpress filter expressio set rna-seq remove written 7 weeks ago by draper • 0
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2
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167
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5 follow
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Filter sam/bam files
filter bam samtools sam gbs written 7 weeks ago by ramesh.8v • 200 • updated 7 weeks ago by swbarnes2 ♦ 3.9k
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1
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135
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Filtering reads on the basis of percentage of ambiguous(N's) characters
filter fastq rna-seq written 8 weeks ago by Varun Gupta • 1.0k • updated 8 weeks ago by Pierre Lindenbaum ♦ 111k
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2
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245
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Extracting genotypes and filtering from a VCF file containing multiple exomes of families
vcf filter exome dna-seq genotype written 11 weeks ago by gradstudentNew • 10 • updated 11 weeks ago by Pierre Lindenbaum ♦ 111k
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2
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134
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Filtering GO terms by neuromuscular processes
filter interactions disease go protein written 3 months ago by eudald.t • 10 • updated 12 weeks ago by jean.elbers • 340
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1
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124
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1
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Using the ranking value to filter
discosnp++ discosnp rna-seq variantcalling filter written 4 months ago by vguerracanedo • 10 • updated 4 months ago by pierre.peterlongo • 820
1
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1
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367
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How to filter VCF where at least x% of the individuals have DP>=10 and GQ>=20
vcf filter gatk written 6 months ago by hellbio • 330 • updated 6 months ago by Pierre Lindenbaum ♦ 111k
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remove lowly expressed genes by selecting genes that had FPKM > 0
filter rna-seq written 6 months ago by DataFanatic • 100
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366
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Use Blast for the three species of Leishmania in order to take only the common sequences in fasta file
fasta filter blast leismania sequences written 9 months ago by dzisis1986 • 20 • updated 7 months ago by Biostar ♦♦ 20
2
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1
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335
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1
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Filter SNP's for no more than 3 mismatches per 10 bp window
filter mismatch snp gatk written 7 months ago by shubhra.bhattacharya • 40 • updated 7 months ago by Pierre Lindenbaum ♦ 111k
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1
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324
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1
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Opinion on Quality basecall threshold to use
vcf filter quality qual written 8 months ago by ricfoz • 20
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1
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554
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1
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filter multisample vcf based on per-sample average read depth
vcf filter variant call read depth written 8 months ago by agathejouet • 0 • updated 8 months ago by Pierre Lindenbaum ♦ 111k
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846
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Tool: Sequence filtration tool
fasta filter sequence tool written 17 months ago by Eslam Samir • 100
1
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1
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299
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1
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problem to filter freq from vcf produced with varscan
vcf filter varscan2 snpsift written 9 months ago by fabbri.marco • 0
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1
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398
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1
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vcf filter dp
vcf filter dp written 9 months ago by chengyi31000 • 0 • updated 9 months ago by Ram ♦ 17k
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521
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vcf file filter
vcf filter snps minor allele homozygotes written 9 months ago by DataFanatic • 100 • updated 9 months ago by Pierre Lindenbaum ♦ 111k
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555
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Help - GATK Variant filtration by AD/DP not working
vcf gatk variantfiltration filter written 10 months ago by manimozhi26 • 0
47
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5
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29k
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31 follow
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Extract Sub-Set Of Regions From Vcf File
vcf genome tabix filter written 6.2 years ago by Rubal7 • 700 • updated 10 months ago by geocarvalho • 80
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1
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644
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1
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CNVnator output filter
filter cnv written 11 months ago by zhang248 • 20 • updated 11 months ago by ChrisJ • 0
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585
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Extract reads from specific target in .bam file
filter bam written 11 months ago by Picasa • 350
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1
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466
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1
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Filtering by specific genotype VCF
vcf filter genotype written 14 months ago by virpatel3 • 20 • updated 12 months ago by agata88 • 720
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1
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495
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1
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Maximum Depth Filter
vcf filter maximum depth written 12 months ago by ATpoint ♦ 6.5k • updated 12 months ago by Pierre Lindenbaum ♦ 111k
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Filter SNPs on depth
filter depth vcftools snp mindp written 13 months ago by Covux • 10 • updated 13 months ago by Istvan Albert ♦♦ 77k
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1
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493
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Filter pileup file for completeness
filter samtools completeness pileup written 23 months ago by AP • 90
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2
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888
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6 follow
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filtering out reads from bam file
gff3 filter bam rna-seq written 16 months ago by sgmiriuka • 0 • updated 16 months ago by Alex Reynolds ♦ 25k
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