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<prev • 150 results • page 1 of 5 • next >
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Make a bed file to exclude 1Mb from start and end of contigs
genome filter mask bed written 19 days ago by Rubal • 310
3
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0
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117
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0
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vcf filter for FORMAT argument (DP/GQ/GQX > 30) multiple (380) vcf file
vcf filter sequencing vcftool written 23 days ago by IndyDNA • 10
16
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6
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4.8k
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6
answers
extract and generate a VCF file with only "PASS"
vcf filter written 3.7 years ago by zengtony743 • 70 • updated 6 weeks ago by Ahmed Alhendi • 40
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2
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116
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2
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Filter SNPs in multiple-sample vcf based on the snps of two samples
vcf filter bash snp linux written 10 weeks ago by e.taylorcox • 0
2
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2
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138
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2
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vcftools separate only selected chrom allocation from 4gb vcf file
vcf filter allocation vcftools written 12 weeks ago by dev.info.2021 • 0
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1.3k
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0
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Snpsift filtering for exon intron
filter snipsift written 5.1 years ago by basalganglia • 30 • updated 3 months ago by Biostar ♦♦ 20
3
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1
answer
1.6k
views
1
answer
Strange Behavior Filtering Reads With Samtools
filter bam samtools written 8.4 years ago by Linda • 160 • updated 7 months ago by Biostar ♦♦ 20
2
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1
answer
253
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1
answer
Different results between two methods for the extraction of SNPs, common for a subgroup from a multiVCF file
snpsift filter ngs snp multivcf written 7 months ago by pavlo.maksimov • 20
2
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0
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270
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0
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Working with redundant information on BLAST output
filter python blast dictionary written 8 months ago by flogin • 190
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2
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370
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2
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Filter nanopore fastq files by start time
filter fastq nanopore start time written 8 months ago by sendhelp • 0 • updated 8 months ago by genomax ♦ 80k
1
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1
answer
222
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1
answer
filter transcript isoforms with low support
filter rna-seq assembly written 9 months ago by ignazio.fontana • 0 • updated 9 months ago by kristoffer.vittingseerup • 3.1k
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1
answer
1.5k
views
1
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vcf filtering and query
vcf filter query written 4.4 years ago by joaofadista • 50 • updated 10 months ago by Biostar ♦♦ 20
3
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0
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490
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5 follow
0
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BCF Tools Filter on 1000Genomes Annotation
annotation bcftools vcftools filter written 11 months ago by jon.klonowski • 70
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2
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1.7k
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5 follow
2
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How to filter sequencing reads in a fastq file by size?
ribo-seq fastq size rna-seq filter written 12 months ago by Beginner • 30 • updated 11 months ago by emeline.a.favreau • 30
1
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1
answer
669
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1
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Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 12 months ago by nute11a • 20 • updated 12 months ago by Istvan Albert ♦♦ 83k
1
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0
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286
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0
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Filter read level data after RNA-seq alignment
reads filter alignment rna-seq written 13 months ago by mohammedtoufiq91 • 110
0
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0
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821
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0
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Filtering Read Quality - Cant remove all reads that have a single base below a threshold
filter fastx quality-score sequencing written 16 months ago by tbb21 • 10 • updated 13 months ago by Biostar ♦♦ 20
3
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1
answer
398
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1
answer
filter gene expression matrix
filter gene expression written 14 months ago by Sam • 140 • updated 14 months ago by finswimmer ♦ 13k
6
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0
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384
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0
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Sequence identity between sequences with different lengths
sequence filter mummer alignment identity written 14 months ago by ricardoguerreiro2121 • 60 • updated 14 months ago by Bastien Hervé ♦ 4.5k
24
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3
answers
11k
views
7 follow
3
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Filtering Paired End Reads
filter fastq fastx written 9.7 years ago by brentp ♦ 23k • updated 14 months ago by Biostar ♦♦ 20
7
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2
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1.5k
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2
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1000Genome SV integrated map's power for SV filter
filter 1000 genome project structural variation written 4.0 years ago by michealsmith • 740 • updated 16 months ago by LGMgeo • 90
0
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0
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1.0k
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0
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bcftools filtering INFO column issues (empty output)
vcf filter bcftools missing info written 16 months ago by Molly_K • 60
12
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3
answers
2.6k
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3
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Remove a list of positions form a VCF file
vcf filter snp written 3.4 years ago by shinken123 • 80 • updated 16 months ago by zx8754 ♦ 9.1k
1
vote
1
answer
346
views
1
answer
Using repeat region filter post QC
exome filter ngs repeats written 17 months ago by zx8754 ♦ 9.1k • updated 17 months ago by Pierre Lindenbaum ♦ 127k
0
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276
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0
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Simultaneous vs sequential marker filters
filter order snp written 17 months ago by zvezdoma • 0
0
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0
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357
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0
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basic command in bash
filter grep rna-seq written 17 months ago by luzglongoria • 40
0
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0
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437
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0
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Filtering SAM file based on column numbers
filter alignment sam written 17 months ago by elena.syp • 0 • updated 17 months ago by Pierre Lindenbaum ♦ 127k
16
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3
answers
3.1k
views
3
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A Grep For Gene Ontology ?
gene filter written 10.0 years ago by Pierre Lindenbaum ♦ 127k • updated 19 months ago by RamRS ♦ 26k
1
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1
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429
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1
answer
Using one bam file with huge coverage, How to generate several bam files with different coverage
filter snps caller bam written 19 months ago by tarek.mohamed • 260 • updated 19 months ago by WouterDeCoster ♦ 43k
3
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1
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645
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1
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Error while trying to filter a .vcf.gz file with a bed.gz file
filter error bed file bed written 19 months ago by ricfoz • 30 • updated 19 months ago by RamRS ♦ 26k
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