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<prev • 159 results • page 1 of 6 • next >
4
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65
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5 follow
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How to filter miRNAs from `NanoString nCounter` assay?
mrna ncounter mirna nanostring filter written 17 days ago by dare_devil • 1.3k
1
vote
1
answer
226
views
1
answer
bcftools to remove non-variants sites
vcf filter bctools vcftools snp written 4 months ago by shiy05 • 0
1
vote
1
answer
211
views
1
answer
Bcftools filter error
filter bcftools written 4 months ago by BAGeno • 170
27
votes
2
answers
20k
views
14 follow
2
answers
How To Filter Bam File
filter written 10.0 years ago by Junfeng • 330 • updated 5 months ago by Biostar ♦♦ 20
4
votes
1
answer
483
views
1
answer
Use bcftools to filter a VCF with multiple filter flags
vcf filter bcftols written 5 months ago by _r_am ♦ 32k
3
votes
1
answer
224
views
1
answer
Filter data frame with dplyr
R dplyr filter written 5 months ago by luca • 30 • updated 5 months ago by rpolicastro ♦ 3.2k
17
votes
7
answers
6.6k
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7
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extract and generate a VCF file with only "PASS"
vcf filter written 4.5 years ago by zengtony743 • 70 • updated 7 months ago by carmen.bugarin.diz • 10
0
votes
1
answer
230
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1
answer
Filter Agilent Data
giswellabovebg alignment filter written 8 months ago by j_jamal96 • 0
0
votes
0
answers
231
views
0
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Make a bed file to exclude 1Mb from start and end of contigs
genome filter mask bed written 10 months ago by Rubal • 330 • updated 8 months ago by Biostar ♦♦ 20
2
votes
1
answer
213
views
1
answer
filter multisample VCF based on Altered AD values
vcf filter ad written 8 months ago by cocchi.e89 • 120 • updated 8 months ago by Pierre Lindenbaum ♦ 133k
0
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0
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226
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0
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Filter SNPs for DP using mean + 2*SD
filter next-gen vcftools snp depth written 9 months ago by QPaps04 • 20
0
votes
0
answers
302
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5 follow
0
answers
Keep the paired reads whose length less than 400,000 bp
filter alignment sam rna-seq bam written 9 months ago by ek699 • 0
3
votes
0
answers
623
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vcf filter for FORMAT argument (DP/GQ/GQX > 30) multiple (380) vcf file
vcf filter sequencing vcftool written 10 months ago by IndyDNA • 10
0
votes
2
answers
321
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2
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Filter SNPs in multiple-sample vcf based on the snps of two samples
vcf filter bash snp linux written 12 months ago by QPaps04 • 20
2
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2
answers
377
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2
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vcftools separate only selected chrom allocation from 4gb vcf file
vcf filter allocation vcftools written 12 months ago by dev.info.2021 • 0
0
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1.5k
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0
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Snpsift filtering for exon intron
filter snipsift written 5.9 years ago by basalganglia • 40 • updated 13 months ago by Biostar ♦♦ 20
3
votes
1
answer
1.8k
views
1
answer
Strange Behavior Filtering Reads With Samtools
filter bam samtools written 9.2 years ago by Linda • 160 • updated 16 months ago by Biostar ♦♦ 20
2
votes
1
answer
380
views
1
answer
Different results between two methods for the extraction of SNPs, common for a subgroup from a multiVCF file
snpsift filter ngs snp multivcf written 17 months ago by pavlo.maksimov • 20
2
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0
answers
404
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0
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Working with redundant information on BLAST output
filter python blast dictionary written 18 months ago by flogin • 250
0
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2
answers
848
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2
answers
Filter nanopore fastq files by start time
filter fastq nanopore start time written 18 months ago by sendhelp • 0 • updated 18 months ago by GenoMax ♦ 95k
1
vote
1
answer
444
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1
answer
filter transcript isoforms with low support
filter rna-seq assembly written 19 months ago by ignazio.fontana • 0 • updated 18 months ago by kristoffer.vittingseerup • 3.5k
0
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1
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1.7k
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1
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vcf filtering and query
vcf filter query written 5.2 years ago by joaofadista • 50 • updated 20 months ago by Biostar ♦♦ 20
3
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0
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830
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5 follow
0
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BCF Tools Filter on 1000Genomes Annotation
annotation bcftools vcftools filter written 21 months ago by jon.klonowski • 70
3
votes
2
answers
2.8k
views
5 follow
2
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How to filter sequencing reads in a fastq file by size?
ribo-seq fastq size rna-seq filter written 21 months ago by Beginner • 40 • updated 21 months ago by emeline.a.favreau • 30
1
vote
1
answer
1.2k
views
1
answer
Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 22 months ago by nute11a • 20 • updated 22 months ago by Istvan Albert ♦♦ 86k
2
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0
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382
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0
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Filter read level data after RNA-seq alignment
reads filter alignment rna-seq written 23 months ago by mohammedtoufiq91 • 110
0
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0
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1.2k
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0
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Filtering Read Quality - Cant remove all reads that have a single base below a threshold
filter fastx quality-score sequencing written 2.1 years ago by tbb21 • 10 • updated 23 months ago by Biostar ♦♦ 20
3
votes
1
answer
630
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1
answer
filter gene expression matrix
filter gene expression written 23 months ago by Sam • 140 • updated 23 months ago by finswimmer ♦ 14k
6
votes
0
answers
660
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0
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Sequence identity between sequences with different lengths
sequence filter mummer alignment identity written 23 months ago by ricardoguerreiro2121 • 60 • updated 23 months ago by Bastien Hervé ♦ 4.9k
24
votes
3
answers
12k
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7 follow
3
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Filtering Paired End Reads
filter fastq fastx written 10.5 years ago by brentp ♦ 23k • updated 24 months ago by Biostar ♦♦ 20
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