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3
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1.5k
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Strange Behavior Filtering Reads With Samtools
filter bam samtools written 7.9 years ago by Linda • 160 • updated 7 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
167
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1
answer
Different results between two methods for the extraction of SNPs, common for a subgroup from a multiVCF file
snpsift filter ngs snp multivcf written 8 weeks ago by pavlo.maksimov • 20
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0
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185
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0
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Working with redundant information on BLAST output
filter python blast dictionary written 3 months ago by flogin • 150
0
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2
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170
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2
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Filter nanopore fastq files by start time
filter fastq nanopore start time written 3 months ago by sendhelp • 0 • updated 3 months ago by genomax ♦ 73k
1
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1
answer
141
views
1
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filter transcript isoforms with low support
filter rna-seq assembly written 3 months ago by ignazio.fontana • 0 • updated 3 months ago by kristoffer.vittingseerup • 2.4k
14
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4
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3.7k
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4
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extract and generate a VCF file with only "PASS"
vcf filter written 3.2 years ago by zengtony743 • 70 • updated 3 months ago by finswimmer ♦ 12k
0
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1
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1.4k
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1
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vcf filtering and query
vcf filter query written 3.9 years ago by joaofadista • 50 • updated 5 months ago by Biostar ♦♦ 20
0
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0
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291
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0
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BCF Tools Filter on 1000Genomes Annotation
annotation bcftools vcftools filter written 6 months ago by jon.klonowski • 30
3
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2
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1.2k
views
5 follow
2
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How to filter sequencing reads in a fastq file by size?
ribo-seq fastq size rna-seq filter written 6 months ago by Beginner • 30 • updated 6 months ago by emeline.a.favreau • 30
1
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1
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406
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1
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Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 6 months ago by nute11a • 0 • updated 6 months ago by Istvan Albert ♦♦ 81k
1
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0
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208
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0
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Filter read level data after RNA-seq alignment
reads filter alignment rna-seq written 8 months ago by mohammedtoufiq91 • 70
0
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0
answers
581
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Filtering Read Quality - Cant remove all reads that have a single base below a threshold
filter fastx quality-score sequencing written 10 months ago by tbb21 • 10 • updated 8 months ago by Biostar ♦♦ 20
3
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1
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295
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1
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filter gene expression matrix
filter gene expression written 8 months ago by Sam • 130 • updated 8 months ago by finswimmer ♦ 12k
6
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0
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266
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0
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Sequence identity between sequences with different lengths
sequence filter mummer alignment identity written 8 months ago by ricardoguerreiro2121 • 20 • updated 8 months ago by Bastien Hervé ♦ 4.5k
24
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3
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11k
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7 follow
3
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Filtering Paired End Reads
filter fastq fastx written 9.3 years ago by brentp ♦ 23k • updated 8 months ago by Biostar ♦♦ 20
7
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2
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1.3k
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2
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1000Genome SV integrated map's power for SV filter
filter 1000 genome project structural variation written 3.5 years ago by michealsmith • 740 • updated 10 months ago by LGMgeo • 90
0
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0
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630
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0
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bcftools filtering INFO column issues (empty output)
vcf filter bcftools missing info written 10 months ago by Molly_K • 60
12
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3
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1.9k
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3
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Remove a list of positions form a VCF file
vcf filter snp written 3.0 years ago by shinken123 • 80 • updated 11 months ago by zx8754 ♦ 8.3k
1
vote
1
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284
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1
answer
Using repeat region filter post QC
exome filter ngs repeats written 11 months ago by zx8754 ♦ 8.3k • updated 11 months ago by Pierre Lindenbaum ♦ 123k
0
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0
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208
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0
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Simultaneous vs sequential marker filters
filter order snp written 11 months ago by zvezdoma • 0
0
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0
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268
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0
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basic command in bash
filter grep rna-seq written 11 months ago by luzglongoria • 20
0
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0
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326
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0
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Filtering SAM file based on column numbers
filter alignment sam written 11 months ago by elena.syp • 0 • updated 11 months ago by Pierre Lindenbaum ♦ 123k
16
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3
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3.0k
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3
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A Grep For Gene Ontology ?
gene filter written 9.5 years ago by Pierre Lindenbaum ♦ 123k • updated 13 months ago by RamRS ♦ 24k
1
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1
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332
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1
answer
Using one bam file with huge coverage, How to generate several bam files with different coverage
filter snps caller bam written 13 months ago by tarek.mohamed • 250 • updated 13 months ago by WouterDeCoster ♦ 41k
3
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1
answer
496
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1
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Error while trying to filter a .vcf.gz file with a bed.gz file
filter error bed file bed written 13 months ago by ricfoz • 30 • updated 13 months ago by RamRS ♦ 24k
1
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1
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297
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1
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GEO search filtering
geo rnaseq filter written 14 months ago by cilgaiscan • 50 • updated 14 months ago by btsui • 290
0
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1
answer
451
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1
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Filter Alt Reads from BAM at List of Known Het Sites
reads filter bam written 14 months ago by alongalor • 0
6
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1
answer
724
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1
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(Sanity check) Too many SNPs?
filter next-gen variant written 24 months ago by rightmirem • 60 • updated 15 months ago by Biostar ♦♦ 20
3
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1
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590
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1
answer
Extracting Cumulative (Rare) Allele Frequencies for a Subset of Variants From a VCF
vcf filter rare variant tests enrichment written 15 months ago by maegsul • 150 • updated 15 months ago by Pierre Lindenbaum ♦ 123k
0
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0
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623
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0
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GOexpress analysis, removing genes with a score of 0?
goexpress filter expressio set rna-seq remove written 16 months ago by draper • 0
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