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<prev • 136 results • page 1 of 5 • next >
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Filtering Read Quality - Cant remove all reads that have a single base below a threshold
filter fastx quality-score sequencing written 7 days ago by tbb21 • 0
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2
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1.1k
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1000Genome SV integrated map's power for SV filter
filter 1000 genome project structural variation written 2.7 years ago by michealsmith • 740 • updated 9 days ago by LGMgeo • 90
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bcftools filtering INFO column issues (empty output)
vcf filter bcftools missing info written 16 days ago by Molly_K • 40
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Remove a list of positions form a VCF file
vcf filter snp written 2.1 years ago by shinken123 • 80 • updated 19 days ago by zx8754 ♦ 6.1k
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85
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Using repeat region filter post QC
exome filter ngs repeats written 4 weeks ago by zx8754 ♦ 6.1k • updated 4 weeks ago by Pierre Lindenbaum ♦ 115k
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59
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Simultaneous vs sequential marker filters
filter order snp written 4 weeks ago by zvezdoma • 0
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94
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basic command in bash
filter grep rna-seq written 4 weeks ago by luzglongoria • 0
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Filtering SAM file based on column numbers
filter alignment sam written 5 weeks ago by elena.syp • 0 • updated 5 weeks ago by Pierre Lindenbaum ♦ 115k
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7 follow
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Filtering Paired End Reads
filter fastq fastx written 8.4 years ago by brentp ♦ 22k • updated 3 months ago by RamRS ♦ 19k
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A Grep For Gene Ontology ?
gene filter written 8.7 years ago by Pierre Lindenbaum ♦ 115k • updated 3 months ago by RamRS ♦ 19k
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Using one bam file with huge coverage, How to generate several bam files with different coverage
filter snps caller bam written 3 months ago by tarek.mohamed • 190 • updated 3 months ago by WouterDeCoster ♦ 35k
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1
answer
202
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Error while trying to filter a .vcf.gz file with a bed.gz file
filter error bed file bed written 3 months ago by ricfoz • 20 • updated 3 months ago by RamRS ♦ 19k
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1
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144
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GEO search filtering
geo rnaseq filter written 4 months ago by cilgaiscan • 30 • updated 4 months ago by btsui • 280
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250
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Filter Alt Reads from BAM at List of Known Het Sites
reads filter bam written 4 months ago by alongalor • 0
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1
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511
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1
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(Sanity check) Too many SNPs?
filter next-gen variant written 13 months ago by rightmirem • 50 • updated 5 months ago by Biostar ♦♦ 20
3
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1
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288
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1
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Extracting Cumulative (Rare) Allele Frequencies for a Subset of Variants From a VCF
vcf filter rare variant tests enrichment written 5 months ago by maegsul • 110 • updated 5 months ago by Pierre Lindenbaum ♦ 115k
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270
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GOexpress analysis, removing genes with a score of 0?
goexpress filter expressio set rna-seq remove written 5 months ago by draper • 0
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2
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267
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5 follow
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Filter sam/bam files
filter bam samtools sam gbs written 5 months ago by ramesh.8v • 200 • updated 5 months ago by swbarnes2 ♦ 4.6k
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1
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1
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Filtering reads on the basis of percentage of ambiguous(N's) characters
filter fastq rna-seq written 5 months ago by Varun Gupta • 1.1k • updated 5 months ago by Pierre Lindenbaum ♦ 115k
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559
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Extracting genotypes and filtering from a VCF file containing multiple exomes of families
vcf filter exome dna-seq genotype written 6 months ago by gradstudentNew • 10 • updated 6 months ago by Pierre Lindenbaum ♦ 115k
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Filtering GO terms by neuromuscular processes
filter interactions disease go protein written 6 months ago by Swimming bird • 10 • updated 6 months ago by jean.elbers • 470
2
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1
answer
181
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1
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Using the ranking value to filter
discosnp++ discosnp rna-seq variantcalling filter written 8 months ago by vguerracanedo • 10 • updated 8 months ago by pierre.peterlongo • 830
1
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1
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552
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1
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How to filter VCF where at least x% of the individuals have DP>=10 and GQ>=20
vcf filter gatk written 10 months ago by hellbio • 340 • updated 10 months ago by Pierre Lindenbaum ♦ 115k
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1
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372
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1
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remove lowly expressed genes by selecting genes that had FPKM > 0
filter rna-seq written 10 months ago by DataFanatic • 110
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Use Blast for the three species of Leishmania in order to take only the common sequences in fasta file
fasta filter blast leismania sequences written 13 months ago by dzisis1986 • 20 • updated 11 months ago by Biostar ♦♦ 20
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1
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438
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1
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Filter SNP's for no more than 3 mismatches per 10 bp window
filter mismatch snp gatk written 11 months ago by shubhra.bhattacharya • 70 • updated 11 months ago by Pierre Lindenbaum ♦ 115k
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394
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Opinion on Quality basecall threshold to use
vcf filter quality qual written 12 months ago by ricfoz • 20
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1
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782
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1
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filter multisample vcf based on per-sample average read depth
vcf filter variant call read depth written 12 months ago by agathejouet • 0 • updated 12 months ago by Pierre Lindenbaum ♦ 115k
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997
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Tool: Sequence filtration tool
fasta filter sequence tool written 21 months ago by Eslam Samir • 100
1
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1
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378
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1
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problem to filter freq from vcf produced with varscan
vcf filter varscan2 snpsift written 12 months ago by fabbri.marco • 0
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