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Interpreting GISTIC2 output
gistic written 6 weeks ago by vctrm67 • 20
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115
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GISTIC analysis input file error
gistic gistic2 written 7 weeks ago by AnnaW • 20
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125
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Amplification over deletion/Deletion over amplification?
gistic written 9 weeks ago by vctrm67 • 20 • updated 9 weeks ago by Kevin Blighe ♦ 67k
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Cannot figure out the reason for this error message: GISTIC 2.0 input error detected: All input data were removed after NaN processing.
software error genome gistic written 11 weeks ago by morten.rye • 0
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GISTIC 2.0 for sequencing data
gistic wgs cna cnv sequencing written 11 weeks ago by vctrm67 • 20
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GISTIC results. Too many deleted genes?
gistic cnv snp written 2.1 years ago by rin • 30 • updated 7 months ago by Kevin Blighe ♦ 67k
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The outputs of GISTIC
gistic copy number cnv written 4.4 years ago by agicict • 160 • updated 7 months ago by Kevin Blighe ♦ 67k
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8 follow
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GISTIC input parameters.
gistic snp cnv written 2.2 years ago by rin • 30 • updated 8 months ago by 2953531955 • 10
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198
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An individual gene in different peak of GISTIC
gistic wgs written 8 months ago by A • 3.9k
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293
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Gistic2 output error
gistic written 10 months ago by samane. • 0 • updated 8 months ago by Kevin Blighe ♦ 67k
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How to perform GISTIC analysis on GenePattern?
gistic snp tcga rna-seq cnv written 14 months ago by Dmitri Ivanovich • 0 • updated 8 months ago by 2953531955 • 10
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6 follow
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How to obtain a segmentation file from Control-FREEC output to use with GISTIC
gistic control-freec written 8 months ago by dganiewich • 120 • updated 8 months ago by Kevin Blighe ♦ 67k
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GISTIC 2.0.23 Error: Floating Point Exception
gistic written 10 months ago by rpaa • 0
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GISTIC 2.0 markers
gistic marker cnv segmentation bioinformatics written 14 months ago by noshadho • 10 • updated 14 months ago by Kevin Blighe ♦ 67k
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456
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Recurrent CNV analysis
gistic gene copy number variation cnv written 14 months ago by noshadho • 10 • updated 14 months ago by Kevin Blighe ♦ 67k
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6 follow
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GISTIC 2.0.23 error
gistic dnacopy copy number written 3.5 years ago by mkaushal • 110 • updated 18 months ago by dompearcejankowski • 10
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591
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Converting between CNV Algorithm results (PICNIC v GISTIC)
gistic snp6 microarray cnv picnic written 19 months ago by sunnyjjones • 20
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301
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Too many genes in specific chromosomal regions - GISTIC results
gistic cnv written 21 months ago by rin • 30 • updated 20 months ago by Kevin Blighe ♦ 67k
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GISTIC segment overlap error
gistic scna cnv snp written 2.0 years ago by Wenhu_Cao • 70 • updated 21 months ago by ysh • 0
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610
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problem in interpretation of Gistic copy number analysis
gistic g-score copy number alteration written 2.1 years ago by nazaninhoseinkhan • 410
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684
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Copy number differences between groups
cna gistic differential written 2.3 years ago by neuro3030 • 10
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474
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deleted gene not in GISTIC peak
gistic hemizygous deletion written 2.3 years ago by neuro3030 • 10
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How do you run GISTIC2 with ExomeCNV outputs?
gistic exomecnv copy number cnv written 2.5 years ago by Andy Lee • 10
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cBioPortal genetic profile id and mutational data analysis
gistic cna tcga cbioportal mutation assessor written 2.7 years ago by CuriusScientist • 50
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51 follow
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Tutorial: Tutorial: Analyze exome Copy number variation (CNV) in single patient or in population.
gistic varscan2 tutorial copy-number cnv written 5.2 years ago by Chirag Nepal • 2.3k • updated 3.1 years ago by brouse3815 • 0
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Interpretation of GISTIC putative copy number alterations for mutations with cBioPortal in a specific cancer dataset
gistic tcga cbioportal mutations sequencing written 3.1 years ago by svlachavas • 680 • updated 3.1 years ago by Kevin Blighe ♦ 67k
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Multiple biopsy issue in MutSig and GISTIC tools
gistic multiple samples multiple biopsies mutsig written 3.2 years ago by apuhegde • 20
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Plotting copy number varation: amplification and deletion data from GISTIC
gistic cna copy number variation plotting R written 4.9 years ago by missnc • 10 • updated 4.1 years ago by sophiespo • 10
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Why does GISTIC require a markers file?
gistic copy number written 4.5 years ago by Irsan • 7.2k • updated 4.4 years ago by neelablore • 0
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Finding sequence of Firebrowse GISTIC CVN regions
gistic cvn firebrowse cancer wgs written 4.5 years ago by Alex Tall • 0
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