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Comment: error when installing gistic2 using conda
Mean Length Of Fasta Sequences
C: Sequence length from Fasta
Sequence length from Fasta
vg autoindex seems stuck after a week of running
Answer: geom_bar issue in ggplot2 with xlim()
A: How Can I Get The Human Chromosome Centromere Position And Chromosome Length In
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Recent Replies
Answer: vg autoindex seems stuck after a week of running
by
Jouni Sirén
▴ 360
GCSA construction is fragile. It can use effectively unlimited amounts of time, memory, and disk space if the graph is too complex. That's …
Comment: Blastn, need help to increase speed
by
Dunois
★ 2.5k
What databases are you using that are creating such large index files?
Answer: Kraken2 Custom Database non-deterministic results
by
colindaven
6.4k
You're using 2 different databases, so results are obviously different. This has nothing to do with deterministic or stochastic behaviour. …
Answer: How to get 2 seurat objects into a DEseq
by
ultraanfibio
▴ 30
Its probably best practice to read all samples into the same seurat object, then do the clustering and asign the cell type labels. Anyways …
Comment: How do we do quantification using stringtie merge option for all the merged samp
by
ATpoint
82k
I ask the same I always ask when people use stringtie for human data. Do you really need a transcript assembly or do you just want gene cou…
Comment: vg autoindex seems stuck after a week of running
by
ATpoint
82k
Is it even running? Use `top` or the Activity Monitor to check if there is activity in the job, or if it is sitting idle indicating corrupt…
Comment: Mapping difference with BWA
by
ATpoint
82k
Cannot be answered without more details. At least add accessions and commands.
Comment: vcf phasing
by
safeassli
▴ 10
Sprry but I'm not an expert in this field. I'm trying to learn Only 0/1, 1/0, and 1/1 genotypes should be phased, as these indicate the pr…
Comment: z-score of gene set
by
Hien
• 0
I have a list of genes in some pathways, I want to see these pathways which are upregulated or downregulated in a total of gene expressions…
Comment: Splitting query fasta file for Diamond Blastp make the process faster?
by
kmat
• 0
Thank you for your quick responce. Sorry for the lack of explanation. Here are some supplementary details regarding the parameters of Diam…
Answer: Splitting query fasta file for Diamond Blastp make the process faster?
by
Mensur Dlakic
★ 27k
There are several pieces of information we are missing here. Did you specify that all 96 threads be used? If so, are all of them being used…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Luqman
• 0
Yes please see below: TraesCS2B02G372900 TraesCS2B02G375100 TraesCS2B02G374700 TraesCS2B02G382000
Comment: Functional enrichment analysis for unique gene IDs
by
Pegasus
▴ 100
Thanks for your answer, but as far as I know, gProfiler2 does not support bacteria. Could you please suggest alternative websites or softwa…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴ 10
Hi Alex, I'm sorry if I wasn't initially clear! The question hasn't changed; I had written in this post that I wanted all pairwise combinat…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Nyksubuz
▴ 20
Could share some examples for gene_ids?
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