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Should energy minimization of native and mutant protein structures be done before RMSD calculation between these two?
rmsd homology energy minimization yasara written 12 days ago by anis.geb.cu • 10
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88
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1
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Whole-genome human-mouse syntenic block tracks/database
genome mouse conservation homology synteny written 10 weeks ago by Papyrus • 360
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1
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106
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1
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Homology of 3' UTRs
utr homology written 3 months ago by i.sudbery ♦ 8.3k • updated 3 months ago by ATpoint ♦ 36k
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258
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is there a web-based tool to cross-species compare multiple nucleotide or protein sequences for identity and homology in batches
alignment homology written 8 months ago by CrazyB • 210 • updated 8 months ago by jared.andrews07 ♦ 6.4k
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Best homology group in eggnog-mapper 2.0.1
eggnog homology annotation written 8 months ago by Asaf ♦ 8.3k
2
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1
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609
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Understanding hhblits output
hhsuite homology hhblits hmm written 13 months ago by mnsp088 • 40 • updated 12 months ago by Biostar ♦♦ 20
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how to use blastpt between isoforms of the same genes?
homology blast written 12 months ago by star • 240 • updated 12 months ago by Mensur Dlakic • 6.0k
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311
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1
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Homology in EMBL Biomart
biomart homology written 12 months ago by The Last Word • 190 • updated 12 months ago by Ben_Ensembl • 1.5k
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2
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Erorr running HHblits
hmm homology protein written 14 months ago by max_19 • 150 • updated 12 months ago by sofimukhtar1 • 0
4
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2
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579
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6 follow
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Tool for visualisation of blast results
alignment homology rna-seq evolutionary genomics written 13 months ago by s.m.frampton • 10 • updated 13 months ago by Joe ♦ 17k
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6 follow
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Homology Modelling And Energy Minimization
homology written 6.9 years ago by tithiroy33 • 0 • updated 14 months ago by manishagurnani10 • 0
2
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1
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211
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1
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custom database in HH-suite
domain hh-suite orthogroup homology hmm written 14 months ago by yp19 • 50 • updated 14 months ago by Joe ♦ 17k
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Forum: Homologous sequences problematic in RNA-seq
genome forum homology rna-seq written 16 months ago by chengye • 10 • updated 16 months ago by h.mon ♦ 30k
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Finding a suitable Independent Variable for a Protein sequence homology analysis
homology sequences blast sequence homology written 17 months ago by minasmayth • 0 • updated 17 months ago by Biostar ♦♦ 20
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What kind of protein matrix substitution use for blastX divergent sequences
matrix homology diamond blast written 18 months ago by Chvatil • 40
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How To Find Human Homologs For Proteins From Candida Albicans
homology protein human written 6.9 years ago by nepalis • 10 • updated 19 months ago by Biostar ♦♦ 20
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573
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Job: Job: Ensembl Bioinformatician - comparative genomics
alignments ensembl homology job gene tree written 21 months ago by Emily_Ensembl ♦ 21k
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5 follow
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How To Find Conserved Regulatory Elements Among Different Genomes?
homology comparative written 9.5 years ago by Anima Mundi • 2.7k • updated 22 months ago by Biostar ♦♦ 20
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6
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9 follow
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Levels Of Gene Homologous-Ness?
gene homology orthologues written 10.1 years ago by Mike Dewar • 1.6k • updated 23 months ago by RamRS ♦ 28k
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8 follow
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Are these two proteins homolog?
homology written 23 months ago by utsafar • 40 • updated 23 months ago by Bharat Iyengar • 280
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Protists homology analysis
protists homology written 2.0 years ago by agata88 • 800 • updated 2.0 years ago by h.mon ♦ 30k
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780
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Strategies for identifying as many homologs as possible
homology phylogenetics est msa blast written 2.2 years ago by michael • 0 • updated 2.2 years ago by Michael Dondrup ♦ 47k
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708
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Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 2.2 years ago by Solowars • 50
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618
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Protein isoforms and paralog sequences
isoforms sequence homology enzyme written 2.2 years ago by Maverick • 20
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501
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UBERON. A way to retrieve relationships?
gene expression homology uberon go ontology written 2.3 years ago by Solowars • 50
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550
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Locus_tag mapping between organisms based on homology
homology locus_tag written 2.3 years ago by Benni • 30 • updated 2.3 years ago by h.mon ♦ 30k
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527
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convert amino acids between species
gene amino acid homology variants written 2.3 years ago by igor ♦ 11k
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Finding homologous genes in different bacteria serovars from reference locus
gene alignment bacteria homology written 2.5 years ago by alejoaguirrea • 0
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Deleting constant site columns OK?
phylogeny alignment homology written 2.7 years ago by dieter • 0
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Confusion between PyRosetta and Rosetta and how to operate PyRosetta
homology rosetta pyrosetta protein assembly written 2.7 years ago by skim • 40
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