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Strange variant call it show a indel but looks like a SNP

indel snp variant ion caller written 4.6 years ago by cristianrohr768 • 30 • updated 21 days ago by Biostar ♦♦ 20

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384

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Read simulators for Ion Torrent platform specific for WES

torrent simulation wes ion amliseq written 11 months ago by world_genesis • 0

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925

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ion ampliseq comprehensive cancer panel

sequencing sequence ion cnv exon written 3.1 years ago by mittu1602 • 150

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1.7k

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Ion Torrent sample data

torrent alignment tool sample ion written 3.2 years ago by Milan Domazet • 10 • updated 3.2 years ago by Keith Callenberg • 890

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2.2k

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Ion semiconductor sequencing - hydrogen ion? water?

next-gen semiconductor ion sequencing written 4.2 years ago by Salut • 0 • updated 4.2 years ago by Devon Ryan ♦ 89k

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1.9k

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What does Read Depth mean in Torrent Browser Analysis Report? Why it is shown as blank after complete sequencing?

ngs chip-seq ion rna-seq written 4.5 years ago by Abdul Rafay Khan • 940 • updated 4.4 years ago by Biostar ♦♦ 20

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Recent Replies

C: What percent of reads should align to a reference gene to successfully validate by lshepard • 220
I don't see why you should not validate this gene then.
C: Single Cell RNA Seq. Analysis by Friederike ♦ 3.6k
You may also find the slides from a class I recently taught helpful ([Chapter 10 would be the one...
C: Protein protein network analysis by Kevin Blighe ♦ 41k
It will depend on the hub score metric that is being used (there are different ones). Please conf...
A: Single Cell RNA Seq. Analysis by Friederike ♦ 3.6k
The [Hemberg Lab](https://hemberg-lab.github.io/scRNA.seq.course/) has a very useful introduction...
C: Gene Set Enrichment Analysis by Kevin Blighe ♦ 41k
Please confirm the following: - the exact program that you used ('*Gene Set Enrichment Analysis...
C: Clinical Data for CCLE Cell Lines by Julie Dutil • 0
We did assign ancestry categories for discussing distributions of the cell line collections. Howe...
C: fastx quality stats outputting .txt? files by Friederike ♦ 3.6k
geat that you found a solution! what made you think the addition of `;` would fix it?
C: R analysis for read counts using edgeR by Friederike ♦ 3.6k
Just a couple of comments: * `lmFit` is a function from limma, which is presumably why you chose...
C: Python Script to map reads to reference sequence by RamRS ♦ 21k
Like genomax said, this sort of task makes no sense. If someone truly wanted you to learn bioinfo...
C: Python Script to map reads to reference sequence by genomax ♦ 65k
This problem is not something one would assign a novice. Sounds rather odd.
C: Python Script to map reads to reference sequence by jrj.healey ♦ 12k
I really dont know how well python is going to cope with trying to align a million characters. Th...
C: Python Script to map reads to reference sequence by Fido • 10
@jrj.healey use native python functions. The reads/sequences are a million bases.

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