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Option 1:
Use MANE select proteins that you can download here (latest release as of today will keep changing) : https://ftp.ncbi.nlm.nih.g…
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Never tried, so idk. Why wouldn't it support it?
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I never tried conda images but since `mamba > conda` I guess mambaforge is better.
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Yes, I do GO and GSEA to get pathway. I download the background gene at https://www.gsea-msigdb.org/gsea/msigdb/human/collections.jsp#C3 Th…
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Make a bigBed file: https://www.biostars.org/p/9546293/
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great! thank you very much!
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[This database](http://humantfs.ccbr.utoronto.ca/download.php) has been the best I've found.
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What have you tried? Have you looked at GO annotations?
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yes @juke34 , I tried agat_sp_compare_two_annotations.pl for both gff files and got comparative output in table format.
Thank you very muc…
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Yes, its similar structure. This snippet should add a new metadata column "sample.New" with what you want to do
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You won't find them on circBase.
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\#TIL mambaforge - better than continuum's conda images I'm guessing?
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If the laptop doesn't support WSL2, then will the Docker (with linux) work?
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