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Comment: Missing protein (VEGF-A) in String db
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shalespringer
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Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Comment: How to convert plink files to Hapmap Format
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Sofia
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These are the first lines of the output: (Please is it normal to have NA in the P value column ?)
CHR …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
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So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
Comment: How to convert plink files to Hapmap Format
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Thank you so much, it actually worked!
Answer: Rare Disease Variant Pathway Analysis
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LauferVA
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Hi @efc1e545 ,
First a caveat. the information we most need in order to help guide you to a successful conclusion is not provided in thi…
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swbarnes2
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The company probably had you share your run with someone who needed the extra bases.
So you get the extra bases free. Just use them unle…
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Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
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DKA
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Thank you for your guidance. The thing is that I am unfamiliar with using such environments, unfortunately.
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Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets
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I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
Comment: Treatment VS Control in Single Cell RNAseq analysis
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Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis?
Can I reach its GitHub reposit…
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> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST
If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases
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5heikki
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This has been discussed [many times][1]
[1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work?
by
Bioinfotec
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I think when you give indent to seuObj :
```r
Idents(seuObj) <- 'RNA_snn_res.0.1'
```
You may wrongly assign other value to it such as `…
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