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Recent Replies
Comment: kallisto index build difference according to version
by
estilo
•
0
Thanks for the comment, especially the one on the file size for comparison gives me so much relief.
Like you said, the index build from di…
Answer: Bioinformatics: what do you think of it in the next 20 years?
by
lagartija
▴
150
I think there will be more data and code management with the development of FAIR tools. But very hard to tell what the new things will be.
Answer: Process Truncated fastq file
by
GenoMax
136k
> Is there a way to process the truncated fastq file?
Once data is compromised in some way you can't be totally sure of the results. Tha…
Comment: kallisto index build difference according to version
by
GenoMax
136k
It is possible that different versions of a program may have improvements in way indexes are created so the file sizes may be different. Yo…
Answer: How to convert UNITE dataset into ecoPCR format to perform insilico PCR?
by
vinranke-adel0j
•
0
+1
I've tried with both obitools2 and obitools 3 but I can't get neither to work.
Obitools2:
obiaddtaxids -f UNITE unite_imsd.fasta …
Comment: Understanding gene level copy number data from TCGAbiolinks
by
Zhenyu Zhang
★
1.1k
This is a GDC question, not a TCGAbiolinks question.
For TCGA, GDC uses ASCAT2 (SNP6) and ASCATNGS (WGS) for integer value copy number. An…
Answer: Which language use as a beginner in Bioinformatics and Computational genomics
by
colindaven
5.7k
Don't forget Nextflow or Snakemake for chaining together either yours or other peoples tools. Those two are really the heart of automated a…
Comment: Bam files generated with STAR cause a segmentation fault core dump error when us
by
bkffadia
•
0
hello GenoMax, thank you for your help.
I have 128Go RAM. when using MMR tool with both files (the one from galaxy and the one I mapped on…
Comment: String App in Cytoscape
by
hellokwmin
•
0
Sir,
Now is working...
I think that server was not good so that network was not formed at that time.
Thank you.
Comment: String App in Cytoscape
by
hellokwmin
•
0
Hello,
Thank you for your reply.
I again added the top 5 terms, but still cytoscape showed me no network... as shown below..
![enter imag…
Comment: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
by
snardeli
•
0
Hi @ialbert ! I have the same question. Any inputs on this? Thanks!
Answer: locuszoom error
by
GenoMax
136k
This error seems to be related to python version. As noted on the [**locuszoom page**][1] you need to use python v.2.7+ (v.3.x can't be use…
Comment: Bam files generated with STAR cause a segmentation fault core dump error when us
by
GenoMax
136k
> received signal SIGSEGV
That indicates an invalid memory location error. Are you assigning enough RAM to the Multimapper tool?
Have y…
Comment: BLAST: overflow error
by
GenoMax
136k
If possible download the latest blast+ executable from https://ftp.ncbi.nih.gov/blast/executables/LATEST/
Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
by
analyst
▴
10
I got this error while extracting snps out of vcf file generated through callvariants.sh.
> htsjdk.tribble.TribbleException: The provided…
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