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13 results • Page
1 of 1
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0
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8
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
50 minutes ago by
James
▴ 10
0
votes
0
replies
21
views
Odd alignment question/finding
Alignment
2 hours ago by
poordumbsillyidiot
• 0
0
votes
1
reply
86
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 3 hours ago by
GenoMax
141k • written 7 hours ago by
mgranada3
▴ 30
0
votes
0
replies
37
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
8 hours ago by
meck
• 0
0
votes
0
replies
57
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 6 hours ago by
Ram
43k • written 8 hours ago by
Oscar
▴ 10
1
vote
4
replies
150
views
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
8 hours ago by
nicole.kavanagh
• 0
0
votes
1
reply
82
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 10 hours ago by
Ram
43k • written 12 hours ago by
ernestine.kubi
• 0
0
votes
0
replies
54
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
12 hours ago by
VITALA
• 0
0
votes
1
reply
147
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
updated 23 hours ago by
Ram
43k • written 1 day ago by
rianna.collins
• 0
0
votes
1
reply
127
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 17 hours ago by
i.sudbery
19k • written 1 day ago by
Edmond
• 0
0
votes
5
replies
294
views
Telescope issue
Telescope
RNA-seq
updated 12 hours ago by
GenoMax
141k • written 1 day ago by
eleven11
• 0
1
vote
2
replies
244
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
16 hours ago by
Nafi
• 0
0
votes
1
reply
146
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
updated 10 hours ago by
Adam
▴ 30 • written 1 day ago by
Ahiad Chen Zion
• 0
13 results • Page
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Answer: NGS forensics: how to know if data is fabricated
Comment: Adjust pvalue in R with different approach give me all different outcome
Comment: Bacterial plasmid analysis
Comment: DESeq2 processing problems
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
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mgranada3
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maryak
▴ 20
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• 0
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Recent Replies
Answer: Is there a way to increase the automatic label text size in Cytoscape?
by
Scooter
▴ 280
Greetings, Are you saying that you can't use the size setting in the style tab? That should certainly work, as should the label size se…
Answer: Basic stats in hierfstat
by
mdav
• 0
Hi Zoe, did you find an answer for this? I am also getting the same error.
Comment: GATK won't produce figures while analyzing covariates to generate 'recal_plots.p
by
GenoMax
141k
Your cluster may be missing libraries etc to create the PDF plots (this looks like a cluster job submission) on your cluster. Did you check…
Comment: Post-imputation plot
by
kl
▴ 10
Ok yes I think my thought was that given these errors, I could remove the mismatches and flip the alleles which seem to need flipping based…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
• 0
I think I will perhaps use their predominant PlasmidFinder type to group plasmids together and create separate core phylogenies for each as…
Comment: Bacterial plasmid analysis
by
GenoMax
141k
Can you classify the plasmids based on function (resistance genes they are carrying or some other criteria). Sizes above are indicating a w…
Comment: DESeq2 processing problems
by
ATpoint
82k
Initially posted here https://support.bioconductor.org/p/9158036/ where I suggested to put code and data and noted that GEOquery returns ar…
Answer: Post-imputation plot
by
LChart
3.9k
I agree that some need to be flipped (A/T and C/G where your panel frequency is 1 - ref panel frequency). There are other variants which yo…
Comment: RNA editing sites based on DNA seq and RNA seq
by
Adam
▴ 30
Are those 20% unaligned reads coming after hyper-editing detection?
Answer: How to find overlap of clusters in two seurat porject
by
Adam
▴ 30
I think your best bet would be to use annotation mapping. You can use the features of your clusters in group 1 and apply them to group 2 to…
Answer: DESeq2 processing problems
by
Adam
▴ 30
> when I put in the dataset, I am not able to run it for DEG analysis because system asks me to remove the first column which is of gene na…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
• 0
Thank you so much for your quick response, I have been searching scientific papers for about a week but have failed to come up with a reaso…
Comment: Bacterial plasmid analysis
by
GenoMax
141k
> however I'm not sure this would be appropriate in my case as the plasmid sequences are obviously much more diverse and vary in size Can…
Answer: cnetplot category names are too long
by
bkleiboeker
▴ 370
I'm sure someone could find a more elegant solution using `stringr::str_wrap`, but for a one-time solution I did this: # my results of…
Comment: Telescope issue
by
GenoMax
141k
You could edit the SAM file but I wonder if this problem is present in your original fastq data file so if not inconvenient do the alignmen…
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