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Multiple testing correction in RNA-Seq
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A: Label selected genes in volcano plot from ggplot
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Comment: finding highly divergent orthologs using exonerate
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dthorbur
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It might be worth trying to cluster sequences with a few intermediate species too. Then the centroid of the cluster can theoretically be on…
Comment: Error with pheatmap - 'from' must be a finite number
by
vmpsb
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> any(is.infinite(mat.z)) [1] FALSE
Comment: Error with pheatmap - 'from' must be a finite number
by
vmpsb
• 0
Thanks, how should I proceed?
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ATpoint
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Difference is that plotting Z-scores plots each group and logFC plots differences between groups. Simply a different way of showing things.…
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dthorbur
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You seem to indicate you found motifs. So why do you now want to reduce the score? Do you want to narrow your search to fewer motifs to mov…
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Are there already annotations published for the genome? If so, I doubt there is a dedicated tool since this is a simple task of parsing the…
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zx8754
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Errors and warnings are clear, we can reproduce them with this simple example Somewhere *pheatmap* is getting a minimum value excluding NA…
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A single PRS number is meaningless without background data like 1000 genomes, UK Biobank, etc.
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Mohamed Abderrahmane
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Thank you so much for your response. The two links are really helpful. I appreciate it. Have a nice day!
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StevieP
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Thanks for this. As a follow-up, the process did indeed complete after 8.5 days so I guess my concerns were unwarranted in the end.
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I won't recommend using conda for installation. The environment is somehow very difficult to set up. Conda will always fail to recognize so…
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I'm also facing the same error
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> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: dbNSFP4.7a database format to Annovar Format?
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Pierre Lindenbaum
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> But instead of I figured out most of the databases, this gave me some problems. what are those problems; This is the question.
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Akash D
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I wonder what is the difference between a heatmap plotted with Z score (on normalized expression values) and the one plotted with simple lo…
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