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Protein/peptide characterization/properties tools
properties protein characterization peptide written 3 months ago by Hansen_869 • 20 • updated 3 months ago by GenoMax ♦ 95k
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188
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multiple peptide docking
docking peptide written 9 months ago by husainbioinfos • 0 • updated 7 months ago by Biostar ♦♦ 20
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1
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993
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1
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QUESTION: Does anyone know of a software similar to PepComposer for computational peptide design?
peptide structure ligand docking written 14 months ago by alexille5640 • 10 • updated 13 months ago by matteoferla • 30
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2
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392
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Question: Is there any software for finding or generating a small peptide ligand given a larger protein/receptor?
peptide ligand docking written 14 months ago by alexille5640 • 10 • updated 14 months ago by Woa • 2.8k
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NCBI blastp fails with "Invalid choice selection: NCBI-Seqalign::Score.value.real"
ncbi blast peptide written 17 months ago by claudius.mueller • 0 • updated 15 months ago by joines • 30
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3
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How to calculate overlap of peptides between different categories to create Ven diagram
venn count R ven diagram peptide written 19 months ago by ishackm • 100 • updated 19 months ago by lieven.sterck ♦ 9.5k
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273
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dimer Peptide building
peptide written 20 months ago by chanchalmrt • 10 • updated 19 months ago by Biostar ♦♦ 20
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354
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How to identify the sequence in the receptor to which my peptide of interest bind to?
peptide protein receptor docking written 21 months ago by soobiney • 0 • updated 20 months ago by Biostar ♦♦ 20
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How to add chain id
peptide written 20 months ago by chanchalmrt • 10
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654
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I'm predicting the protein-peptide structure. Why is the result different everytime?
sequence prediction protein peptide written 21 months ago by soobiney • 0 • updated 21 months ago by Michael Dondrup ♦ 48k
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Tool: Clustering of short peptide sequences
peptide tool clustering phage display written 5.3 years ago by jockbanan • 390
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1
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702
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1
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Peptide cutter library
peptide enzyme pepsin trpysin written 2.1 years ago by jongyook2 • 0 • updated 2.1 years ago by Jean-Karim Heriche ♦ 24k
2
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1
answer
772
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1
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How to run PSSPred on multple sequences
psspred sequence peptide written 2.8 years ago by Tom • 30 • updated 2.8 years ago by Pierre Lindenbaum ♦ 133k
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1
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Why some of the gene peptides returned by biomaRt do not have an asterisk in the end?
biomart peptide written 3.4 years ago by ebrudermanver • 80 • updated 3.4 years ago by Emily_Ensembl ♦ 21k
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clustering peptide sequences
clustering peptide written 3.7 years ago by elmira b • 40
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1
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Prediction of peptide function, How to do?
software function prediction peptide written 4.0 years ago by Leite • 1.1k • updated 4.0 years ago by Petr Ponomarenko • 2.7k
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841
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Clustering small peptides based on secondary structure sequence (DSSP classification with "C","H", and "E")
secondary structure clustering dssp peptide written 4.1 years ago by ericbrenner • 0
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2
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2
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mapping thousands of random k-mer peptides against one protein sequence
alignment protein mapping peptide written 4.5 years ago by vinni • 0 • updated 4.5 years ago by dariober ♦ 11k
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1
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in silico study of antimicrobial peptide
simulation gromacs antimicrobial peptide written 4.7 years ago by Arindam Ghosh • 340 • updated 4.6 years ago by Biostar ♦♦ 20
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add ions to peptide
tutorial add ions peptide written 4.6 years ago by Hassan Rasouli • 10
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Uniprot Accession and Position to peptide sequence
R uniprot peptide written 4.7 years ago by desc • 0 • updated 4.6 years ago by Elisabeth Gasteiger • 1.9k
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1.4k
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searching short peptide sequences against a large database
alignment sequence blast peptide written 4.6 years ago by h.mendel • 0 • updated 4.6 years ago by sdf.ambreen • 10
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2
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979
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Automate peptide lookup / matching in human plasma proteome (http://www.peptideatlas.org/hupo/hppp/) database
bioinformatics database automate hupo peptide written 5.0 years ago by cisek • 0
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how to obtain the locations of a exon and its corresponding peptide from a specific transcript in bioMart
biomart exon peptide written 5.2 years ago by jjaeyun • 0 • updated 5.2 years ago by informatics bot • 640
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5 follow
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Position Weight Matrix in R or Python
matrix pwm peptide written 6.5 years ago by esantosh10 • 30 • updated 5.3 years ago by kamil_cygan • 40
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Degenerate motif search - ScanProsite limitations
alignment motif peptide written 6.0 years ago by george.r.pope • 0
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3.4k
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Motif enrichment using motif-x: how to pick significant motifs
significant enrichment motif-x motif peptide written 6.5 years ago by by0 • 110
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1
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mapping peptide sequences
peptide written 6.6 years ago by biolab • 1.2k • updated 6.6 years ago by cdsouthan • 1.8k
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