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19
votes
4
answers
4.2k
views
7 follow
4
answers
How To Retrieve Gene Variations From Ensembl Using The Perl Api?
perl ensembl api variation written 7.2 years ago by Jarretinha ♦ 3.2k • updated 1 day ago by Biostar ♦♦ 20
3
votes
0
answers
115
views
0
answers
Problem, getting information only from the last row and not from all the rows
perl written 1 day ago by ArusjakGevorgyan • 20
4
votes
1
answer
76
views
1
answer
Extracting multiple features using NCBI's e-utilities?
perl e-utilities written 8 days ago by ThePresident • 90
3
votes
1
answer
1.3k
views
1
answer
NCBI E-utilities : HTTP POST not working for EPost
ncbi e-utilities perl epost written 2.9 years ago by pawan.samdani • 0 • updated 21 days ago by payreqepostapp • 0
7
votes
4
answers
6.2k
views
8 follow
4
answers
Perl Or Python Script To Calculate Phi,Psi Angle Of A Pdb File
pdb python perl written 6.8 years ago by Siddharth • 30 • updated 21 days ago by jamie.a • 0
1
vote
1
answer
83
views
1
answer
converting FPC maps to CMAP format
genome perl map cmap fpc written 23 days ago by bradford.condon • 30
2
votes
0
answers
180
views
0
answers
Perl script problem: Remove duplicates from my fasta file with help of perl
perl duplicates fasta file written 6 weeks ago by ArusjakGevorgyan • 20 • updated 4 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
175
views
1
answer
News: Ensembl Perl API course, April 2018
news course training perl ensembl api written 3 months ago by Emily_Ensembl ♦ 14k
0
votes
0
answers
165
views
0
answers
How to calculate standard deviation of coverage for each scaffold in a pileup file?
perl coverage pileup sequencing written 5 weeks ago by PollardMD • 0
4
votes
1
answer
162
views
1
answer
How to specify columns in Uniprot batch query from Uniprot IDs?
perl proteinid uniprot batch written 5 weeks ago by Solowars • 30 • updated 5 weeks ago by Elisabeth Gasteiger • 1.4k
0
votes
0
answers
180
views
0
answers
Job: Bioinformatics Implementation Manager
perl python job R linux written 6 weeks ago by Recruit • 210
1
vote
0
answers
108
views
0
answers
Problem with adding element in a array (Perl script)
perl array script written 7 weeks ago by ArusjakGevorgyan • 20 • updated 7 weeks ago by Pierre Lindenbaum ♦ 106k
1
vote
2
answers
126
views
2
answers
perl path in mirdeep
perl env written 8 weeks ago by Sam • 50 • updated 8 weeks ago by h.mon ♦ 13k
0
votes
1
answer
178
views
1
answer
Convert Nexus format to Newick format
perl converter nexus newick written 9 weeks ago by ArusjakGevorgyan • 20 • updated 9 weeks ago by lieven.sterck • 1.2k
7
votes
2
answers
158
views
2
answers
How to convert string into fasta using bash?
fasta perl string bash written 9 weeks ago by SaltedPork • 70 • updated 9 weeks ago by Pierre Lindenbaum ♦ 106k
9
votes
3
answers
186
views
3
answers
Any ideas on converting IUPAC ambiguity codes in a fasta file
fasta iupac regex perl bash written 10 weeks ago by SaltedPork • 70 • updated 10 weeks ago by st.ph.n • 2.2k
8
votes
2
answers
267
views
2
answers
How can I calculate the number of sequences starting with different nucleotides using perl
fasta perl written 10 weeks ago by MAPK • 1.2k • updated 10 weeks ago by Neilfws ♦ 47k
10
votes
2
answers
310
views
6 follow
2
answers
Batch Renaming Files
perl R python snp genome written 10 weeks ago by Tastulek • 0
0
votes
1
answer
213
views
1
answer
Perl error: Can't locate bioUtils.pm in @INC (you may need to install the bioUtils module)
perl script written 11 weeks ago by arsilan324 • 40
1
vote
1
answer
190
views
1
answer
GFF to fasta
perl annotation gff sequencing genome written 11 weeks ago by mmats010 • 50
86
votes
14
answers
28k
views
28 follow
14
answers
Extracting Sequence From A 3Gb Fasta File
fasta perl sequence retrieval written 7.9 years ago by Divya • 250 • updated 12 weeks ago by andplaia • 0
19
votes
3
answers
332
views
6 follow
3
answers
Computer logistics of comparing genomes within same individual
genome perl mysql wgs written 12 weeks ago by dickerson.joshua • 0 • updated 12 weeks ago by Chris Miller ♦ 19k
0
votes
0
answers
308
views
0
answers
Downloading PDB files from BindingDB by script
perl written 4 months ago by srdjanmasirevic2 • 10 • updated 12 weeks ago by Biostar ♦♦ 20
5
votes
3
answers
311
views
8 follow
3
answers
Find the same repeat sequence in two fasta files
perl written 3 months ago by Damian_Civ • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 106k
0
votes
1
answer
155
views
1
answer
how to get protparam physico and chemical properties for each sequence using perl programming?
perl sequence protparam written 3 months ago by jananiinfo14 • 0 • updated 3 months ago by Elisabeth Gasteiger • 1.4k
1
vote
1
answer
198
views
1
answer
convert CSQ and ANN fields to a tab delimitet document with its headers
vcf perl ann csq parsing written 3 months ago by paumarc • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 106k
1
vote
3
answers
380
views
3
answers
How to extract and calculate all protein atom to ligand atom distances from pdb files in PERL
perl written 3 months ago by srdjanmasirevic2 • 10 • updated 3 months ago by yamule • 180
0
votes
0
answers
186
views
0
answers
How to get the correct strand of the gene?
gene perl rna ensembl core api written 3 months ago by ali.ebrahimpour.71 • 0
0
votes
2
answers
421
views
2
answers
Filtering out incorrect index combinations in fastq file
software error perl next-gen sequencing written 5 months ago by craigdj91 • 0 • updated 3 months ago by 5heikki ♦ 7.2k
5
votes
1
answer
3.3k
views
1
answer
Error: Circos Plot Creating In Windows Perl (First Time User Problem)
perl windows graphs written 6.2 years ago by John • 1.4k • updated 3 months ago by Biostar ♦♦ 20
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