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34
votes
8
answers
5.7k
views
15 follow
8
answers
Forum: Programming Language In Bioinformatics
perl python forum written 7.2 years ago by AndreiR • 260 • updated 12 days ago by lakouiss.younes • 0
1
vote
1
answer
68
views
1
answer
Compare pairs of key/value of perl hash tables in thre input files
hash table perl protein domain unix hashes written 18 days ago by aiswaryabioinfo • 20 • updated 18 days ago by JC ♦ 10k
1
vote
0
answers
276
views
5 follow
0
answers
How to extract CDS zones and list to an secondary text file. Perl
perl genome origin chromosome cds written 7 weeks ago by matache.razvan911 • 0 • updated 21 days ago by emi_14_ar • 0
0
votes
0
answers
61
views
0
answers
How to extract CDS zones and list to an secondary text file. Perl
genome perl sequence written 21 days ago by emi_14_ar • 0 • updated 21 days ago by ATpoint ♦ 36k
3
votes
4
answers
184
views
6 follow
4
answers
Comparing multiple columns from 2 files using awk, perl or python
perl python awk written 24 days ago by aboozar.soorni • 30
13
votes
4
answers
2.3k
views
4
answers
fastq to fasta perl
perl fasta fastq written 5.0 years ago by cabraham03 • 20 • updated 5 weeks ago by lakhujanivijay ♦ 5.0k
4
votes
3
answers
136
views
5 follow
3
answers
Extract fasta sequences based on ids file
fasta perl sequence sed awk written 7 weeks ago by marcelolaia • 10
10
votes
3
answers
5.2k
views
3
answers
How To Transform An Interleaved Fasta File To A Sequential Fasta File
fasta perl written 7.0 years ago by samlambrechts299 • 150 • updated 9 weeks ago by Biostar ♦♦ 20
2
votes
2
answers
143
views
7 follow
2
answers
average depth across samples
perl snp bash written 9 weeks ago by ijlal.hyder2012 • 10
0
votes
1
answer
147
views
1
answer
Sort and extract common entries from a txt file.
perl python unix written 12 weeks ago by arriyaz.nstu • 0 • updated 12 weeks ago by Kevin Blighe ♦ 61k
0
votes
0
answers
95
views
0
answers
How to extract multi-line protein sequences with Ids present in headers ?
perl sed awk written 3 months ago by sharmatina189059 • 40 • updated 3 months ago by Pierre Lindenbaum ♦ 129k
1
vote
0
answers
125
views
0
answers
Help for a perl script.
perl written 3 months ago by arriyaz.nstu • 0
8
votes
3
answers
2.2k
views
3
answers
Make multi-fasta using perl
perl fasta multi-fasta written 5.2 years ago by sun.nation • 120 • updated 3 months ago by Biostar ♦♦ 20
6
votes
2
answers
389
views
2
answers
Removing small contigs from fasta files
perl assembly contigs fasta written 7 months ago by subrahmanya • 0 • updated 4 months ago by Bioinfo • 20
5
votes
1
answer
161
views
1
answer
LexWords perl module for ProDeGe software
perl installation prodege module lexwords written 4 months ago by kmyers2 • 40
6
votes
1
answer
4.1k
views
1
answer
Fasta to axt - KaKs Calculator
perl R kaks python bash written 5.2 years ago by tlorin • 270 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
339
views
1
answer
Is there any tool available to generate ultrametric tree from a rooted phylogenetic tree?
phylogeny perl python unix R written 5 months ago by Dineshkumar K • 40 • updated 5 months ago by Brice Sarver • 3.5k
4
votes
2
answers
207
views
2
answers
How to parse sequences from a gbk file, based on the coordinates specified in given file?
perl python bash gbk written 5 months ago by Dineshkumar K • 40 • updated 5 months ago by vkkodali • 2.0k
2
votes
0
answers
304
views
0
answers
Want to edit bioperl script for making .ptt files (for each contig) from .gbk files.
genome software error dna-seq perl python written 6 months ago by Bioinfo_learner • 20 • updated 5 months ago by genomax ♦ 85k
19
votes
2
answers
5.1k
views
16 follow
2
answers
Tutorial: Interactive Perl Learning
perl tutorial written 7.1 years ago by Medhat ♦ 8.7k • updated 5 months ago by zubenel • 90
0
votes
2
answers
187
views
2
answers
automate command using bash or perl script?
perl assembly rast bash written 5 months ago by sharmatina189059 • 40 • updated 5 months ago by JC ♦ 10k
3
votes
2
answers
2.6k
views
2
answers
Bioperl Retrieve Fasta Sequence With Colon In Header
perl fasta bioperl written 7.6 years ago by jason.r.gallant • 10 • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
231
views
0
answers
Job: Senior Bioinformatician - Assembly
perl python unix job written 6 months ago by Recruit • 230
0
votes
0
answers
209
views
0
answers
Job: Senior Bioinformatician - Annotation
perl python unix job written 6 months ago by Recruit • 230
9
votes
2
answers
313
views
2
answers
Extract sequences consecutively from a large fasta files and save in new fasta files
perl python R shell fasta written 7 months ago by Dineshkumar K • 40 • updated 7 months ago by Chirag Parsania • 1.8k
141
votes
10
answers
90k
views
47 follow
10
answers
Fastq Convert To Fasta
perl written 6.7 years ago by biolab • 1.2k • updated 8 months ago by brianpenghe • 20
3
votes
3
answers
283
views
5 follow
3
answers
Converting amino acid sequences to numerical values
perl R sequence script python written 8 months ago by karish03 • 10 • updated 8 months ago by JC ♦ 10k
0
votes
0
answers
221
views
0
answers
How to retrieve/extract specific intergenic regions?
perl python extract intergenic region written 8 months ago by geizetomazetto • 0
0
votes
1
answer
248
views
1
answer
Unable to install Jbrowse setup in xampp on centos
perl xampp browser jbrowse written 8 months ago by vivek37373 • 0 • updated 8 months ago by scott • 50
35
votes
5
answers
19k
views
30 follow
5
answers
Filtering Fastq Sequences Based On Lengths
perl unix awk written 7.3 years ago by empyrean999 • 170 • updated 8 months ago by komjinhubuio • 10
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