Showing: picardreset
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Piping Markduplicates
exome ngs picard written 4.1 years ago by Sam2.1k • updated 6 days ago by rmf90
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Issues running RNAseqc on my bam file
picard qc bam rnaseqc rna written 4 weeks ago by vineelagangalapudi0 • updated 4 weeks ago by Pierre Lindenbaum101k
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Estimating Insert Size From Paired End Data.
picard paired-end alignment written 3.7 years ago by geek_y8.1k • updated 4 weeks ago by jmodlis0
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picard installation failure
software error picard written 11 weeks ago by sanariyaz2110 • updated 5 weeks ago by simon.vanheeringen110
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estimated library size in Picard
picard estimated library size written 6 weeks ago by dattatreya.m0 • updated 6 weeks ago by Brian Bushnell14k
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Picard alignment statistics error
software error last picard samtools alignment written 20 months ago by mia70 • updated 6 weeks ago by Dan D6.2k
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bam to fastq conversion, number of reads do not match
picard sam bam rna-seq written 11 weeks ago by Anushka20 • updated 11 weeks ago by Pierre Lindenbaum101k
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rna seq genome coverage
gatk picard coverage rna-seq written 3 months ago by ea140210 • updated 3 months ago by geek_y8.1k
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Duplicates in ATAC-seq data
duplicates picard atac-seq samtools rmdup written 4 months ago by rbronste150 • updated 4 months ago by James Ashmore2.1k
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Picard CollectAlignmentMetrics Output
picard collectalignmentmetrics written 4 months ago by fiona.newberry60 • updated 4 months ago by Pierre Lindenbaum101k
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User-defined coverage in CollectHsMetrics [Picard]
next-gen broadinstitute picard coverage written 4 months ago by anu014120 • updated 4 months ago by Pierre Lindenbaum101k
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Compute inner mate distance for paired-end reads in a bam file
paired picard bam written 5 months ago by bioinfo890 • updated 5 months ago by Devon Ryan73k
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Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
picard samtools bam sort written 5.7 years ago by Rm7.6k • updated 5 months ago by cmdcolin690
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Does Markduplicates Work If Mate Pair Information Is Not 'Fixed'?
duplicates picard markduplicates bam written 5.2 years ago by ian.streeter10 • updated 5 months ago by Biostar ♦♦ 20
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some problem about VCF produced by PICARD VARSCAN SOMATIC command
vcf somatic picard written 15 months ago by yanghao0 • updated 5 months ago by jessieyuan6660
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Getting error in running GATK (GenomeAnalysisTK-3.7)?
gatk picard mutation rna-seq written 8 months ago by Mask170 • updated 5 months ago by LLinging000
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CollectAlignmentSummaryMetrics from Picard
picard collectalignmentsummarymetrics written 6 months ago by David_emir200 • updated 6 months ago by Pierre Lindenbaum101k
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Difference Between Picards Mergebamalignment And Mergesamfiles
picard written 4.8 years ago by Johan770 • updated 6 months ago by Carlos Borroto1.5k
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Picard vs samtools rmdup
picard samtools rna-seq written 7 months ago by xd_d70 • updated 6 months ago by igor4.7k
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Picard Markduplicates Problem
duplicates picard written 6 months ago by xd_d70 • updated 6 months ago by genomax37k
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Error parsing SAM header. @RG line missing SM tag. Line: @RG ID:None
picard na12878 written 7 months ago by Covux10 • updated 7 months ago by Pierre Lindenbaum101k
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Malformed BAM file produced by BWA
gatk picard samtools written 7 months ago by joreamayarom90 • updated 7 months ago by Pierre Lindenbaum101k
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Problem using picard reordersam
picard reordersam written 7 months ago by mirza80 • updated 7 months ago by Pierre Lindenbaum101k
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