Showing: picardreset
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3
votes
1
answer
119
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1
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bam to fastq conversion, number of reads do not match
picard sam bam rna-seq written 18 days ago by Anushka20 • updated 18 days ago by Pierre Lindenbaum98k
4
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1
answer
147
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1
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picard installation failure
software error picard written 20 days ago by sanariyaz210 • updated 20 days ago by Pierre Lindenbaum98k
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0
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93
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0
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1
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1
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235
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1
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rna seq genome coverage
gatk picard coverage rna-seq written 6 weeks ago by ea140210 • updated 6 weeks ago by geek_y8.0k
2
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1
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225
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1
answer
2
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2
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225
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2
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Duplicates in ATAC-seq data
duplicates picard atac-seq samtools rmdup written 9 weeks ago by rbronste140 • updated 9 weeks ago by James Ashmore2.0k
0
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1
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138
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1
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Picard CollectAlignmentMetrics Output
picard collectalignmentmetrics written 11 weeks ago by fiona.newberry60 • updated 11 weeks ago by Pierre Lindenbaum98k
3
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1
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161
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1
answer
2
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2
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265
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2
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Compute inner mate distance for paired-end reads in a bam file
paired picard bam written 3 months ago by bioinfo890 • updated 3 months ago by Devon Ryan70k
32
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8
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18k
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10 follow
8
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Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
picard samtools bam sort written 5.5 years ago by Rm7.5k • updated 3 months ago by cmdcolin680
3
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2
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270
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6 follow
2
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0
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0
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147
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0
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1
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1
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1.8k
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1
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Does Markduplicates Work If Mate Pair Information Is Not 'Fixed'?
duplicates picard markduplicates bam written 5.0 years ago by ian.streeter10 • updated 3 months ago by Biostar ♦♦ 20
0
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1
answer
324
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1
answer
some problem about VCF produced by PICARD VARSCAN SOMATIC command
vcf somatic picard written 13 months ago by yanghao0 • updated 3 months ago by jessieyuan6660
7
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3
answers
619
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7 follow
3
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Getting error in running GATK (GenomeAnalysisTK-3.7)?
gatk picard mutation rna-seq written 6 months ago by Mask170 • updated 3 months ago by LLinging000
0
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0
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224
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0
answers
2
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1
answer
202
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1
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CollectAlignmentSummaryMetrics from Picard
picard collectalignmentsummarymetrics written 4 months ago by David_emir200 • updated 4 months ago by Pierre Lindenbaum98k
5
votes
2
answers
4.4k
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2
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Difference Between Picards Mergebamalignment And Mergesamfiles
picard written 4.7 years ago by Johan770 • updated 4 months ago by Carlos Borroto1.5k
6
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2
answers
564
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5 follow
2
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Picard vs samtools rmdup
picard samtools rna-seq written 4 months ago by xd_d60 • updated 4 months ago by igor4.5k
2
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1
answer
276
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1
answer
Picard Markduplicates Problem
duplicates picard written 4 months ago by xd_d60 • updated 4 months ago by genomax33k
3
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2
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526
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2
answers
Error parsing SAM header. @RG line missing SM tag. Line: @RG ID:None
picard na12878 written 5 months ago by Covux10 • updated 5 months ago by Pierre Lindenbaum98k
3
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1
answer
235
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1
answer
Malformed BAM file produced by BWA
gatk picard samtools written 5 months ago by joreamayarom80 • updated 5 months ago by Pierre Lindenbaum98k
3
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1
answer
244
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1
answer
Problem using picard reordersam
picard reordersam written 5 months ago by mirza80 • updated 5 months ago by Pierre Lindenbaum98k
1
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1
answer
228
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1
answer
Picard FilterVcf Javascript Usage
picard filtervcf javascript written 5 months ago by hellbio260 • updated 5 months ago by Pierre Lindenbaum98k
2
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1
answer
300
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1
answer
5
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1
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312
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1
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Picard Build Failure
picard written 6 months ago by NGS-Newbie10
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241
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0
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2
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1
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296
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1
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3
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1
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253
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1
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Picard install problem
picard install written 6 months ago by agicict90 • updated 6 months ago by Pierre Lindenbaum98k
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2
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278
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2
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Picard MergeBamAlignment failure
picard drop-seq written 6 months ago by dec98620
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