Showing: picardreset
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8
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164
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7 follow
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Find bams with identical names and merge them
shell picard samtools sam bam written 12 days ago by brendes20 • updated 10 days ago by cpad011210k
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34 follow
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98
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Problem in using picard.jar
picard written 4 weeks ago by R.A.50 • updated 4 weeks ago by Pierre Lindenbaum116k
41
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2
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15k
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15 follow
2
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Out Of Disk Space With Picard Tools ?
picard tool written 6.8 years ago by Gabriel R.2.5k • updated 5 weeks ago by africainterpol1010
1
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1
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146
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1
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Warning in GATK Picard MarkDuplicates
variant calling gatk picard markduplicates written 5 weeks ago by Mehulsharma.25310 • updated 5 weeks ago by Pierre Lindenbaum116k
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163
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3
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168
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Issues with Marking Duplicates in Picard
gatk picard samtools sorting bwa written 6 weeks ago by sarah.kettelkamp0 • updated 6 weeks ago by goodez420
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163
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5 follow
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101
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how to set metrics file when using MarkDuplicates in Picard
software error genome picard written 12 weeks ago by Yingzi Zhang50 • updated 12 weeks ago by zx87546.2k
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8 follow
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Extracting Read Pairs From Region So That All Pairs Remain Intact
fastq picard samtools bam written 5.3 years ago by Davy360 • updated 3 months ago by cmdcolin1.0k
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How do I configure the read name output from STAR?
paired-end picard chip-seq star written 3.8 years ago by jgbradley190 • updated 3 months ago by RamRS20k
1
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447
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Adding read group to bam files from multiplexed samples
gatk picard bam written 5 months ago by serpalma.v20 • updated 3 months ago by Biostar ♦♦ 20
2
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2
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472
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6 follow
2
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1
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1
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407
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1
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LiftOver a VCF file
vcf liftovervcf crossmap picard written 3 months ago by Susmita Mandal20 • updated 3 months ago by RamRS20k
2
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1
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1
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Error while building picard tools from broadinstitute-picard-a4d54b4
picard broad written 2.9 years ago by rubic180 • updated 3 months ago by RamRS20k
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1
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986
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1
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[GATK] Weird error using Picard SortVcf on COSMIC file
gatk picard rna-seq mutect2 written 2.9 years ago by umn_bist320 • updated 3 months ago by RamRS20k
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Is there an authoritative source for optional BAM tags?
duplicates picard markduplicates bam written 2.9 years ago by John12k • updated 4 months ago by RamRS20k
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349
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4
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290
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Picard ERROR:INVALID_VERSION_NUMBER of sorted BAM file
sam file flag picard error written 4 months ago by marongiu.luigi350 • updated 4 months ago by Pierre Lindenbaum116k
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454
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5 follow
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2
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Add Information To @Rg Using Picard, Without Replacing Read Groups
picard written 5.7 years ago by DonJoe30 • updated 5 months ago by Biostar ♦♦ 20
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301
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6 follow
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using bash variable in picard MarkDuplicates command
ngs picard written 5 months ago by cmccabe170 • updated 5 months ago by h.mon22k
0
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1
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184
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1
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AddOrReplace gp in Pickard Sam validation error
software error picard rna-seq written 6 months ago by KG0 • updated 6 months ago by Pierre Lindenbaum116k
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