Showing: picardreset
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How treat a Bam file with mutiple read groups (RG)
gatk next-gen picard read group bam written 12 days ago by zamani_20120 • updated 12 days ago by Pierre Lindenbaum117k
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CollectHsMetrics base coverage output has overlapping targets
picard coverage written 21 days ago by blazer913110 • updated 21 days ago by wyattsevans0
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mate_not_found ValidateSam (picardtools) error
alignment picard mapping bwa written 6 weeks ago by emi.trucchi0 • updated 6 weeks ago by finswimmer11k
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AddOrReplaceReadGroups error -
picard written 8 weeks ago by phylofun10 • updated 8 weeks ago by RamRS20k
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Find bams with identical names and merge them
shell picard samtools sam bam written 10 weeks ago by brendes20 • updated 10 weeks ago by cpad011211k
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Problem in using picard.jar
picard written 3 months ago by Raheleh50 • updated 3 months ago by Pierre Lindenbaum117k
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Out Of Disk Space With Picard Tools ?
picard tool written 6.9 years ago by Gabriel R.2.6k • updated 3 months ago by africainterpol1010
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Warning in GATK Picard MarkDuplicates
variant calling gatk picard markduplicates written 3 months ago by Mehulsharma.25310 • updated 3 months ago by Pierre Lindenbaum117k
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Issues with Marking Duplicates in Picard
gatk picard samtools sorting bwa written 3 months ago by sarah.kettelkamp0 • updated 3 months ago by goodez460
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how to set metrics file when using MarkDuplicates in Picard
software error genome picard written 5 months ago by Yingzi Zhang60 • updated 5 months ago by zx87546.7k
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Extracting Read Pairs From Region So That All Pairs Remain Intact
fastq picard samtools bam written 5.5 years ago by Davy360 • updated 5 months ago by cmdcolin1.1k
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How do I configure the read name output from STAR?
paired-end picard chip-seq star written 3.9 years ago by jgbradley190 • updated 5 months ago by RamRS20k
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Adding read group to bam files from multiplexed samples
gatk picard bam written 7 months ago by serpalma.v20 • updated 5 months ago by Biostar ♦♦ 20
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LiftOver a VCF file
vcf liftovervcf crossmap picard written 5 months ago by Susmita Mandal30 • updated 5 months ago by RamRS20k
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Error while building picard tools from broadinstitute-picard-a4d54b4
picard broad written 3.1 years ago by rubic180 • updated 5 months ago by RamRS20k
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[GATK] Weird error using Picard SortVcf on COSMIC file
gatk picard rna-seq mutect2 written 3.1 years ago by umn_bist320 • updated 5 months ago by RamRS20k
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