Showing: picardreset
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how to set metrics file when using MarkDuplicates in Picard
software error genome picard written 26 days ago by Yingzi Zhang40 • updated 26 days ago by zx87545.6k
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Extracting Read Pairs From Region So That All Pairs Remain Intact
fastq picard samtools bam written 5.2 years ago by Davy360 • updated 28 days ago by cmdcolin920
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How do I configure the read name output from STAR?
paired-end picard chip-seq star written 3.6 years ago by jgbradley190 • updated 5 weeks ago by RamRS19k
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Adding read group to bam files from multiplexed samples
gatk picard bam written 3 months ago by serpalma.v20 • updated 6 weeks ago by Biostar ♦♦ 20
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LiftOver a VCF file
vcf liftovervcf crossmap picard written 7 weeks ago by Susmita Mandal0 • updated 7 weeks ago by RamRS19k
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Error while building picard tools from broadinstitute-picard-a4d54b4
picard broad written 2.7 years ago by rubic170 • updated 7 weeks ago by RamRS19k
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[GATK] Weird error using Picard SortVcf on COSMIC file
gatk picard rna-seq mutect2 written 2.7 years ago by umn_bist320 • updated 7 weeks ago by RamRS19k
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Is there an authoritative source for optional BAM tags?
duplicates picard markduplicates bam written 2.7 years ago by John12k • updated 8 weeks ago by RamRS19k
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Picard ERROR:INVALID_VERSION_NUMBER of sorted BAM file
sam file flag picard error written 8 weeks ago by marongiu.luigi330 • updated 8 weeks ago by Pierre Lindenbaum114k
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Add Information To @Rg Using Picard, Without Replacing Read Groups
picard written 5.6 years ago by DonJoe30 • updated 3 months ago by Biostar ♦♦ 20
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using bash variable in picard MarkDuplicates command
ngs picard written 3 months ago by cmccabe170 • updated 3 months ago by h.mon21k
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AddOrReplace gp in Pickard Sam validation error
software error picard rna-seq written 4 months ago by KG0 • updated 4 months ago by Pierre Lindenbaum114k
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Read group information
gatk picard read group bwa written 4 months ago by bwczech0 • updated 4 months ago by WouterDeCoster34k
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Does SortSam lead to a loss of data?
picard written 4 months ago by James Reeve30 • updated 4 months ago by ATpoint9.1k
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Picard MarkDuplicates flag vs remove issue
duplicates picard atac-seq markduplicates written 5 months ago by s146906010 • updated 5 months ago by prakash520
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Generate the sequence dictionary
software error alignment picard written 5 months ago by jahanzaib1193110 • updated 5 months ago by Vijay Lakhujani3.1k
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bait interval list for picard collecthsmetrices
exome picard alignment written 5 months ago by archie70 • updated 5 months ago by igor6.9k
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Bam to fastq conversion is giving error?
software error genome fastq picard bam written 17 months ago by kirannbishwa01870 • updated 5 months ago by Biostar ♦♦ 20
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