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from unmapped bam file picard samtofastq produced no output
bedtools picard rna-seq written 8 weeks ago by Rashedul Islam370 • updated 13 days ago by kunleisaac820
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read group, fastq files, and multiple run ids
picard gatk fastq next-gen readgroups written 3 months ago by Cricket10 • updated 4 weeks ago by Biostar ♦♦ 20
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Picard HsMetrics on Whole Genome (no bedfile) need "HS_Penalty_20X & HS_LIBRARY_SIZE"
gatk picard written 2.7 years ago by Jon1710 • updated 7 weeks ago by Biostar ♦♦ 20
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Failed to liftover from hg38 to hg19
crossmap picard written 17 months ago by BAGeno170 • updated 7 weeks ago by Biostar ♦♦ 20
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Picard Base Distribution by Cycle and adapter contamination
picard atac-seq written 9 weeks ago by ElCascador20 • updated 9 weeks ago by h.mon29k
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PCR duplicate reads - samtools
flagstats duplicated picard samtools written 3 months ago by dina91n0 • updated 3 months ago by swbarnes27.7k
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Deduplication using UMItools
duplication picard umitools bam rna-seq written 4 months ago by Ati30 • updated 4 months ago by Devon Ryan95k
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Problems with picard markduplicates
picard samtools markduplicates written 6 months ago by Cecelia20 • updated 5 months ago by Biostar ♦♦ 20
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The Picard FilterSAM READ is throwing error
reads assembly picard rna-seq written 6 months ago by a.james210 • updated 6 months ago by Pierre Lindenbaum128k
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Graphing GC Bias in Sequence Capture
bed picard gcbias sequencing written 13 months ago by Jon1710 • updated 6 months ago by Chao Tang40
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Understanding Samtools Flagstat Output
illumina paired-end picard samtools markduplicates written 6.6 years ago by geek_y11k • updated 6 months ago by Nitha10
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Hg38 to b37 LiftOver chain?
picard written 6 months ago by vctrm6710
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Alternate Tag Types for Picard
picard alignment rna-seq written 6 months ago by Ben30 • updated 6 months ago by John Marshall2.0k
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How to get chrM chr1 ...chr22 chrX chrY order in my bam file
gatk picard snp bam sort written 7 months ago by Ada0 • updated 7 months ago by jkbonfield350
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