repet Posts

C: LImma design matrix and contrast matrix creation by dare_devil • 1.4k
Can you update your `targets` file here
C: FastQC per base to total base calculator by GenoMax ♦ 96k
FastQC produces a companion zip archive that should contain all the data used for generating Fast...
A: bcftools command not working by GenoMax ♦ 96k
Most likely. Power9 CPU's are not compatible with x86 binary that you likely downloaded. You will...
C: Downloading multiple studies SRA data through while loop by GenoMax ♦ 96k
Did you verify that `esearch` is bringing back valid results for all queries? For many accessions...
A: How do I use FindAllMarkers after making additional cluster assignments? by Pancreas Pratik • 110
So this was solved with the help of @nbpeterson3 on the Seurat github Discussion page. So when F...
A: finding bacterial genes in dataset by john.chandler2011 • 0
Thanks, I will check it out.
C: SRA toolkit fastq files download error by opplatek • 80
You can just copy ENA fastq ftp links and downloaded them with `curl` or `wget` directly to the s...
C: Very high ratio of cases to controls - how to increase statistical power? by mfshiller • 10
That's actually one of the solutions I thought about. Either: 1. increasing sample size 2. corre...
A: Cytoscape - long list of proteins, very messy result by Mensur Dlakic • 9.0k
It would be very difficulty to see individual proteins and their interactions when the number is ...
C: Cytoscape - long list of proteins, very messy result by Ram ♦ 32k
Please see https://www.biostars.org/p/309884/ to add your images properly. You need **the direct ...
C: Very small quantity of adapter contamination, real or not? by GenoMax ♦ 96k
If you are going to use `stacks` then that should work.
A: Enrichment Analysis, Clustering and Scoring with pathfindR by volkanergin • 0
Hi, I have two similar DEG lists, one worked very well with pathfindR, but the 2nd one failed ...