Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: scrna-seq • reset
or   Classic search
<prev • 35 results • page 1 of 2 • next >
1
vote
3
answers
126
views
3
answers
gene counts in Seurat after RunCCA() and AlignSubspace()
scrna-seq seurat cca written 11 days ago by Bogdan • 690
4
votes
2
answers
2.7k
views
11 follow
2
answers
Finding Variable Genes in Seurat, scRNA-seq
scrna-seq rna-seq seurat written 17 months ago by asyndeton17 • 20 • updated 8 days ago by Nitin Sharma • 30
0
votes
0
answers
94
views
0
answers
Drug target discovery with single cell RNA-seq
scrna-seq drug target written 18 days ago by g.e.novakovsky • 20
0
votes
0
answers
217
views
0
answers
RNA-strandness of single cell library prep methods
scrna-seq smarter-seq nextera fluidigm written 5 weeks ago by piyushjo • 100 • updated 20 days ago by RamRS ♦ 20k
0
votes
0
answers
114
views
0
answers
mitochondrial/ribosomal protein genes in scRNA-seq analysis
scrna-seq data processing rna-seq written 24 days ago by g.e.novakovsky • 20
7
votes
1
answer
270
views
6 follow
1
answer
Split fastq according to barcodes
scrna-seq fastq demultiplexing written 4 weeks ago by Hughie • 10 • updated 4 weeks ago by finswimmer ♦ 8.9k
1
vote
0
answers
140
views
0
answers
Filtering paired reads when forward is all scRNA-seq barcode sequence
scrna-seq alignment rna-seq written 4 weeks ago by connor.driscoll88 • 0
0
votes
1
answer
127
views
1
answer
scRNA-seq: a question about the names of the columns in a Seurat object
scrna-seq written 5 weeks ago by Bogdan • 690
35
votes
6
answers
2.8k
views
20 follow
6
answers
why PCA for RNA-Seq but tSNE for scRNA-seq?
scrna-seq pca tsne rna-seq written 8 months ago by CY • 270 • updated 7 weeks ago by Minstein • 60
3
votes
1
answer
359
views
1
answer
scRNA-seq, SEURAT, NormalizeData, ScaleData, PCA, CCA ...
scrna-seq written 8 weeks ago by Bogdan • 690
0
votes
0
answers
107
views
0
answers
Data for comparison between control and treat samples (cells or patients) by single-cell RNA-Seq
scrna-seq written 9 weeks ago by landscape95 • 150
0
votes
1
answer
184
views
1
answer
Evaluate single cell data to look at combinations of gene expression within single cells
scrna-seq analysis rna-seq written 12 weeks ago by stellaparker • 10 • updated 12 weeks ago by singlecell • 0
4
votes
1
answer
1.4k
views
6 follow
1
answer
Normalization of single cell RNA-seq data with different read depths
scrna-seq rna-seq written 14 months ago by mariah • 10 • updated 3 months ago by wt215 • 0
0
votes
0
answers
171
views
0
answers
scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 3 months ago by g.e.novakovsky • 20
1
vote
1
answer
165
views
1
answer
Fit GLM using part of the data
scrna-seq glm edger written 3 months ago by rasmus.agren • 0 • updated 3 months ago by Kevin Blighe ♦ 35k
4
votes
1
answer
283
views
1
answer
Faster UMI extraction from scRNA-Seq data
scrna-seq umi umi_tools rna-seq written 4 months ago by paulranum11 • 30 • updated 4 months ago by benformatics • 390
1
vote
0
answers
553
views
0
answers
What are the difference between Seurat and Cell Ranger pipeline in processing single cell RNA-seq data
scrna-seq sequence leukemia rna-seq written 4 months ago by bwang258 • 10 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
267
views
1
answer
how to do TSNEPlot which differentiate the sample and cluster at the same time in scRNA-seq data?
scrna-seq written 4 months ago by biologo • 10 • updated 4 months ago by ApoorvaB • 160
0
votes
2
answers
272
views
2
answers
Differential expression with MAST using scran-normalized data
scrna-seq mast scran written 4 months ago by smt8n • 0
1
vote
1
answer
404
views
1
answer
single cell RNA-seq pipeline
scrna-seq written 6 months ago by Bogdan • 690 • updated 6 months ago by Mike • 1.1k
1
vote
1
answer
425
views
1
answer
How to assess extent of cell-type admixtures from bulk RNA-seq data for a single tissue?
deconvolution scrna-seq cellmix rna-seq written 7 months ago by nancy • 60 • updated 7 months ago by YaGalbi • 1.4k
6
votes
1
answer
680
views
1
answer
lack of replicates in single-cell RNA-seq
scrna-seq single-cell rna-seq written 8 months ago by igor ♦ 7.2k • updated 8 months ago by Friederike ♦ 2.4k
0
votes
1
answer
330
views
1
answer
For Mean Expression/FC Calculations in scRNA-seq, should I use All cells or only Expressed Cells?
scrna-seq next-gen monocle written 8 months ago by achits • 20 • updated 8 months ago by Charles Warden ♦ 5.9k
2
votes
0
answers
876
views
0
answers
Using marker genes to identify cell cluster
scrna-seq findallmarkers rna-seq seurat tsne plot written 8 months ago by Behram Radmanesh • 10
0
votes
0
answers
164
views
0
answers
Number of genes/transcript detected in scRNA seq
scrna-seq gene rna-seq written 9 months ago by naman.sep • 0
7
votes
2
answers
948
views
2
answers
scRNA-seq data processing from 10X device
scrna-seq rna-seq 10x genomics written 9 months ago by nikitavlassenko • 10 • updated 9 months ago by genomax ♦ 60k
0
votes
0
answers
527
views
0
answers
Differential Gene Expression Analysis using two distinct scRNA-seq datasets
scrna-seq differential gene expression rna-seq written 14 months ago by Eskimo • 90
2
votes
2
answers
3.2k
views
5 follow
2
answers
Making a 3d tSNE Plot in Seurat for scRNA-seq
scrna-seq tsne rna-seq seurat written 16 months ago by asyndeton17 • 20 • updated 14 months ago by garyhokawai • 30
1
vote
0
answers
796
views
0
answers
Tool: DASC -- detecting hidden batch effects in gene expression datasets (Array/RNA-Seq/scRNA-Seq)
scrna-seq R batcheffects tool rna-seq written 19 months ago by Ar • 800
0
votes
0
answers
1.1k
views
0
answers
Analyzing MARS-seq (single-cell RNA seq) fastq files
single-cell scrna-seq alignment rna-seq written 16 months ago by Eldad Shulman • 0
<prev • 35 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • Europe, just now
  • Republic of Ireland, 1 minute ago
  • Germany, 3 minutes ago
  • India/Bangalore/Jubilant Biosys, 3 minutes ago
  • United States, 3 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1688 users visited in the last hour