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<prev • 46 results • page 1 of 2 • next >
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scRNA-seq non-technical article
scrna-seq article written 9 days ago by brc • 0
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138
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scRNA-seq python tutorial
scrna-seq python tutorial rna-seq written 10 days ago by brc • 0 • updated 10 days ago by Friederike ♦ 3.3k
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Analyzing MARS-seq (single-cell RNA seq) fastq files
single-cell scrna-seq alignment rna-seq written 19 months ago by Eldad Shulman • 0 • updated 11 days ago by kkarri • 0
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129
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Dunn Index for Clusters from scRNA-Seq
scrna-seq scater clustering dunn index scran written 14 days ago by hkarakurt • 40
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152
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Differential Expression Analysis between conditions of single cell RNA-Seq
scrna-seq rna-seq differential expression analysis written 18 days ago by hkarakurt • 40
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169
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Drug target discovery with single cell RNA-seq
scrna-seq drug target written 12 weeks ago by g.e.novakovsky • 20 • updated 18 days ago by Biostar ♦♦ 20
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121
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Mitochondrial Gene percentage threshold in single cell RNA-Seq
scrna-seq rna-seq mitochondrial genes written 23 days ago by hkarakurt • 40
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113
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1
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Enrichment Analysis with only GeneSymbols
scrna-seq enrichment rna-seq R written 27 days ago by hkarakurt • 40 • updated 27 days ago by caggtaagtat • 470
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155
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Silhouette Plots for Clustering Quality (Multiple Algorithm)
scrna-seq R clustering rna-seq written 6 weeks ago by hkarakurt • 40
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117
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Seurat on both pooled and unpooled samples
scrna-seq rna-seq seurat written 7 weeks ago by Kristin Muench • 380 • updated 7 weeks ago by RamRS ♦ 20k
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283
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7 follow
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How does monocle identify the begging of pseudotime?
scrna-seq rna velocity cell trajectory rna-seq written 9 weeks ago by popantrop • 30 • updated 8 weeks ago by kristoffer.vittingseerup • 1.6k
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216
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Filtering paired reads when forward is all scRNA-seq barcode sequence
scrna-seq alignment rna-seq written 3 months ago by connor.driscoll88 • 0 • updated 8 weeks ago by Biostar ♦♦ 20
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202
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Normalizing using Seurat with large numbers of samples
scrna-seq R single cell written 9 weeks ago by Kristin Muench • 380
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In Seurat, what data is VlnPlot() plotting?
scrna-seq seurat rna-seq single cell written 9 weeks ago by Kristin Muench • 380
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gene counts in Seurat after RunCCA() and AlignSubspace()
scrna-seq seurat cca written 11 weeks ago by Bogdan • 720
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11 follow
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Finding Variable Genes in Seurat, scRNA-seq
scrna-seq rna-seq seurat written 19 months ago by asyndeton17 • 20 • updated 10 weeks ago by Nitin Sharma • 30
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326
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RNA-strandness of single cell library prep methods
scrna-seq smarter-seq nextera fluidigm written 3 months ago by piyushjo • 110 • updated 12 weeks ago by RamRS ♦ 20k
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219
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mitochondrial/ribosomal protein genes in scRNA-seq analysis
scrna-seq data processing rna-seq written 3 months ago by g.e.novakovsky • 20
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6 follow
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Split fastq according to barcodes
scrna-seq fastq demultiplexing written 3 months ago by Hughie • 10 • updated 3 months ago by finswimmer ♦ 11k
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207
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scRNA-seq: a question about the names of the columns in a Seurat object
scrna-seq written 3 months ago by Bogdan • 720
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20 follow
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why PCA for RNA-Seq but tSNE for scRNA-seq?
scrna-seq pca tsne rna-seq written 10 months ago by CY • 280 • updated 4 months ago by Minstein • 70
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701
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scRNA-seq, SEURAT, NormalizeData, ScaleData, PCA, CCA ...
scrna-seq written 4 months ago by Bogdan • 720
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171
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Data for comparison between control and treat samples (cells or patients) by single-cell RNA-Seq
scrna-seq written 4 months ago by landscape95 • 160
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236
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Evaluate single cell data to look at combinations of gene expression within single cells
scrna-seq analysis rna-seq written 5 months ago by stellaparker • 10 • updated 5 months ago by singlecell • 0
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6 follow
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Normalization of single cell RNA-seq data with different read depths
scrna-seq rna-seq written 16 months ago by mariah • 10 • updated 5 months ago by wt215 • 0
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245
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scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 5 months ago by g.e.novakovsky • 20
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210
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1
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Fit GLM using part of the data
scrna-seq glm edger written 6 months ago by rasmus.agren • 0 • updated 6 months ago by Kevin Blighe ♦ 39k
4
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1
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395
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Faster UMI extraction from scRNA-Seq data
scrna-seq umi umi_tools rna-seq written 6 months ago by paulranum11 • 30 • updated 6 months ago by benformatics • 640
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What are the difference between Seurat and Cell Ranger pipeline in processing single cell RNA-seq data
scrna-seq sequence leukemia rna-seq written 6 months ago by bwang258 • 20 • updated 6 months ago by Biostar ♦♦ 20
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how to do TSNEPlot which differentiate the sample and cluster at the same time in scRNA-seq data?
scrna-seq written 6 months ago by biologo • 10 • updated 6 months ago by ApoorvaB • 190
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