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Error in FindTransferAnchors Seurat
scrna-seq seurat written 8 days ago by massonix • 0
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News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scrna-seq news rna-seq written 8 days ago by carlopecoraro2 • 1.1k
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Job: Heidelberg, Germany: Computational scientists
scrna-seq post-doc phd job statistics written 10 days ago by Simon Anders • 30
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Tool: Venice: a fast and accurate approach to find marker genes in single-cell RNA-seq data
single-cell scrna-seq marker genes tool written 23 days ago by sonpham • 570
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Imputation of scRNA-seq data
scrna-seq imputation rna-seq written 28 days ago by mariafirulevabio • 30
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6 follow
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Making a 3d tSNE Plot in Seurat for scRNA-seq
scrna-seq tsne rna-seq seurat written 22 months ago by asyndeton17 • 20 • updated 7 weeks ago by DrAcula • 0
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Should batch correction be performed before or after feature selection in scRNA-seq
scrna-seq feature selection batch effect written 7 weeks ago by Lucy • 0
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Single cell-seq data preprocessing-How to detect the gene/transcript distribution for each single cell
scrna-seq written 8 weeks ago by sreekalasn • 0 • updated 8 weeks ago by Friederike ♦ 4.5k
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How to calculate average expression of each gene from single cell RNA-Seq data
scrna-seq single cell rna-seq rna-seq written 9 weeks ago by amir_v • 0
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GSVA for mouse scRNA-Seq
scrna-seq gsva written 9 weeks ago by oriolebaltimore • 110
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UMAP interpretation in scRNA-seq analysis
scrna-seq umap pseudotime written 12 weeks ago by chipolino • 40 • updated 10 weeks ago by Biostar ♦♦ 20
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157
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What to think about when treating scRNA-Seq data as bulk RNA-Seq data
scrna-seq bulk rna-seq written 3 months ago by chilifan • 70
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455
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Normalizing using Seurat with large numbers of samples
scrna-seq R single cell written 6 months ago by Kristin Muench • 420
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Tool: Hera-T: an efficient and accurate algorithm for single-cell transcript quantification
scrna-seq single-cell tool rna-seq written 3 months ago by Jennifer Pham • 290
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scRNA-seq non-technical article
scrna-seq article written 4 months ago by brc • 10
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scRNA-seq python tutorial
scrna-seq python tutorial rna-seq written 4 months ago by brc • 10 • updated 4 months ago by Friederike ♦ 4.5k
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Analyzing MARS-seq (single-cell RNA seq) fastq files
single-cell scrna-seq alignment rna-seq written 23 months ago by Eldad Shulman • 0 • updated 4 months ago by kkarri • 0
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278
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Dunn Index for Clusters from scRNA-Seq
scrna-seq scater clustering dunn index scran written 4 months ago by hkarakurt • 60
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Differential Expression Analysis between conditions of single cell RNA-Seq
scrna-seq rna-seq differential expression analysis written 4 months ago by hkarakurt • 60
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285
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Drug target discovery with single cell RNA-seq
scrna-seq drug target written 6 months ago by chipolino • 40 • updated 4 months ago by Biostar ♦♦ 20
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Mitochondrial Gene percentage threshold in single cell RNA-Seq
scrna-seq rna-seq mitochondrial genes written 4 months ago by hkarakurt • 60
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179
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Enrichment Analysis with only GeneSymbols
scrna-seq enrichment rna-seq R written 4 months ago by hkarakurt • 60 • updated 4 months ago by caggtaagtat • 650
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344
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Silhouette Plots for Clustering Quality (Multiple Algorithm)
scrna-seq R clustering rna-seq written 5 months ago by hkarakurt • 60
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226
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Seurat on both pooled and unpooled samples
scrna-seq rna-seq seurat written 5 months ago by Kristin Muench • 420 • updated 5 months ago by RamRS ♦ 22k
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533
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7 follow
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How does monocle identify the begging of pseudotime?
scrna-seq rna velocity cell trajectory rna-seq written 6 months ago by popantrop • 40 • updated 5 months ago by kristoffer.vittingseerup • 2.0k
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Filtering paired reads when forward is all scRNA-seq barcode sequence
scrna-seq alignment rna-seq written 7 months ago by connor.driscoll88 • 0 • updated 5 months ago by Biostar ♦♦ 20
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In Seurat, what data is VlnPlot() plotting?
scrna-seq seurat rna-seq single cell written 6 months ago by Kristin Muench • 420
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gene counts in Seurat after RunCCA() and AlignSubspace()
scrna-seq seurat cca written 6 months ago by Bogdan • 800
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11 follow
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Finding Variable Genes in Seurat, scRNA-seq
scrna-seq rna-seq seurat written 23 months ago by asyndeton17 • 20 • updated 6 months ago by Nitin Sharma • 30
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RNA-strandness of single cell library prep methods
scrna-seq smarter-seq nextera fluidigm written 7 months ago by piyushjo • 110 • updated 6 months ago by RamRS ♦ 22k
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