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Tutorial: scRNA-seq CITE-seq-count bioinformatics
scrna-seq cite-seq-count tutorial rna-seq written 10 days ago by colindaven • 2.1k
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Papers on Paired Single Cell and Bulk RNAseq
scrna-seq rna-seq written 11 days ago by jrleary • 70 • updated 11 days ago by atgustin • 10
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Is the upregulation of ribosome genes in scRNA-seq reliable?
scrna-seq ribosome gene rna-seq written 13 days ago by tujuchuanli • 60
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10X Feature Barcoding
scrna-seq rna-seq written 24 days ago by zekunmu95 • 0 • updated 24 days ago by h.mon ♦ 29k
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Benchmarking of current scRNA-seq analytical tools
scrna-seq R data analysis rna-seq python written 25 days ago by asifadil • 60
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Forum: Feature Selection in 10X scRNA-seq data
scrna-seq forum pca software-error written 3 months ago by ATpoint ♦ 32k • updated 26 days ago by will.townes • 20
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Question about scRNA-seq analysis
scrna-seq written 27 days ago by tujuchuanli • 60
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a question about the analysis pipeline in SEURAT3, with HARMONY, LIGER, etc
scrna-seq harmony conos liger written 5 weeks ago by Bogdan • 980
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bcl2fastq results in Poly-N in R1
scrna-seq single-cell paired-end bcl2fastq rna-seq written 6 weeks ago by Assa Yeroslaviz • 1.3k • updated 6 weeks ago by genomax ♦ 80k
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a question about filtering and integrating data in Seurat3
scrna-seq seurat3 written 8 weeks ago by Bogdan • 980
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normalization methods for scRNA-seq and RNA-seq in specific cases of increased global transcription
scrna-seq rna-seq written 9 weeks ago by Bogdan • 980
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Force directed graphs compared to other dimensionality reduction methods for scRNA-seq
scrna-seq rna-seq single cell machine learning written 12 weeks ago by MutationalMeltdown • 50 • updated 9 weeks ago by Jean-Karim Heriche ♦ 22k
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Question about the type of SRA data (SRR9713131, single- or pair-end?)
scrna-seq written 9 weeks ago by tujuchuanli • 60
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analysis of multiple time points * 2 replicates of scRNA-seq
scrna-seq liger seurat written 10 weeks ago by Bogdan • 980
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Normalization for Unique Molecular Identifier (UMI)
scrna-seq rna-seq written 10 weeks ago by JulianC • 10
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Journals for rapid publication in computational biology
scrna-seq R scrna rna-seq big data written 10 weeks ago by asifadil • 60 • updated 10 weeks ago by JC ♦ 9.7k
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Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
scrna-seq dataset integration written 12 weeks ago by piyushjo • 310 • updated 11 weeks ago by zhang.firework • 0
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Linking SEURAT to DiffusionMAP
scrna-seq rna-seq seurat written 11 weeks ago by Morris_Chair • 170
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scRNA-seq : split a SEURAT cluster into 2 sub-clusters
scrna-seq written 11 weeks ago by Bogdan • 980
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markers to define a cell population in a single UMAP
scrna-seq rna-seq seurat written 11 weeks ago by Morris_Chair • 170
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scRNA-seq analysis : the IDENTITY of the CLUSTERS across MULTIPLE EXPERIMENTS
scrna-seq written 12 weeks ago by Bogdan • 980
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Tool: Hera-T: an efficient and accurate algorithm for quantifying single-cell UMI count data
scrna-seq single-cell tool rna-seq written 12 months ago by Jennifer Pham • 320
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Average insert size and standard deviation among R1 and R2 scRNA-seq 10X
scrna-seq rna-seq sequencing written 3 months ago by elb • 170 • updated 3 months ago by genomax ♦ 80k
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question about mean of the squares of CNA values in scRNA-seq
scrna-seq written 3 months ago by tujuchuanli • 60
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scRNA-seq : adding a trans-gene to the reference genome and the analysis with Seurat
scrna-seq written 3 months ago by Bogdan • 980
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scRNA-seq and the batch effects
scrna-seq rna-seq written 3 months ago by Bogdan • 980 • updated 3 months ago by jared.andrews07 ♦ 5.3k
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Tool: Omics Playground: a comprehensive self-service platform for visualization, analytics and exploration of Omics Data
scrna-seq ngs expression data tool rna-seq written 3 months ago by BigOmics Analytics • 30
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scRNA-seq : about the sets of non-differential genes between the clusters of cells
scrna-seq written 4 months ago by Bogdan • 980
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How to extract a specific gene sequence for a specific cell from scRNA-seq fastq file
scrna-seq sequencing written 4 months ago by cook.675 • 20 • updated 4 months ago by mahmoud.s.fahmy • 0
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DEsingle differential-expression analysis
scrna-seq differential-expression analysis written 4 months ago by Lucy • 40
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