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<prev • 157 results • page 1 of 6 • next >
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Memory Error when running `scrublet`
scrna-seq scrublet doublet written 4 days ago by Assa Yeroslaviz • 1.4k
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109
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Estimating hetero/homogeneity of scRNAseq clusters
scrna-seq R written 6 weeks ago by jrleary • 130 • updated 4 days ago by Biostar ♦♦ 20
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8 follow
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Split fastq according to barcodes
scrna-seq fastq demultiplexing written 20 months ago by Houyu Zhang • 20 • updated 8 days ago by frederick.boehm • 0
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2
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mitochondrial/ribosomal protein genes in scRNA-seq analysis
scrna-seq data processing rna-seq written 19 months ago by chipolino • 40 • updated 11 days ago by jared.andrews07 ♦ 6.4k
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single cell RNA analysis
scrna-seq sctransform memory seurat written 12 days ago by re_raz • 0 • updated 12 days ago by rpolicastro • 570
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Can I enrich a gene expression signature derived from single cell RNA-Seq in a bulk RNA-Seq data set?
scrna-seq rnaseq gene expression signature gsea written 16 days ago by miherbert • 10 • updated 16 days ago by geek_y ♦ 11k
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scRNA-seq data at different time points
scrna-seq written 28 days ago by Bogdan • 1000
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119
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Difference between Seurat standard integration workflow and Seurat reference-based integration
scrna-seq reference-based integration seurat written 4 weeks ago by mvis1231 • 20
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166
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Deterimining overall number of differentially expressed genes between WT and KO samples
scrna-seq findmarkers seurat deg written 5 weeks ago by singcell • 0
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subsetting seurat object with multiple samples
scrna-seq seurat written 5 weeks ago by Assa Yeroslaviz • 1.4k • updated 5 weeks ago by jared.andrews07 ♦ 6.4k
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164
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1
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QC metrics for each dataset in Seurat for scRNA-seq
scrna-seq qc seurat written 5 weeks ago by mvis1231 • 20 • updated 5 weeks ago by jared.andrews07 ♦ 6.4k
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comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
scrna-seq written 6 weeks ago by demoraesdiogo2017 • 40
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107
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Relative variance in PCA of scaled data of scRNA-Seq
variance scrna-seq pca seurat written 6 weeks ago by jomo018 • 610
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99
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scRNASeq of rare heterogenous population with weak response
scrna-seq single nuclei seq trajectories seurat written 7 weeks ago by frymor2 • 10
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111
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What are the differences between the Seurat v3 clustering algorithms?
scrna-seq R seurat written 6 weeks ago by jrleary • 130
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132
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Can I manually add nCount_RNA & nFeature_RNA to a converted Seurat object?
scrna-seq R seurat written 6 weeks ago by jrleary • 130
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156
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computing resources for scRNA-seq analysis
scrna-seq R sequencing written 7 weeks ago by Bogdan • 1000
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Programmatically kicking off cellranger based on fastq folder format
10x scrna-seq fastq cellranger written 8 weeks ago by Vincent Laufer • 1.1k
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193
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SingleR for integrated scRNA-seq analysis
scrna-seq integrated singler assay written 8 weeks ago by mvis1231 • 20 • updated 8 weeks ago by igor ♦ 11k
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115
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low mappability of scRNA data
scrna-seq mapping rna-seq sequencing written 8 weeks ago by annaA • 10 • updated 8 weeks ago by ATpoint ♦ 36k
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106
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Distribution of cell numbers in Seurat
scrna-seq R nfeature_rna seurat ncount_rna written 9 weeks ago by mvis1231 • 20
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119
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Mutational analysis on 10X scRNA-seq 3' v3 library
scrna-seq single cell rna-seq rna-seq written 9 weeks ago by Kevin.OConnor • 0
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142
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1
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How to identify down-regulated genes in monocle
scrna-seq monocle degs written 12 weeks ago by tujuchuanli • 60
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253
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5 follow
1
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Batch correction in scRNA-seq data via fastMNN | pro/contra
scrna-seq fastmnn scran batchelor written 12 weeks ago by ATpoint ♦ 36k
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Tool: BioTuring Big Data: a new portal for reanalyzing large public single-cell RNA-seq data sets
single-cell scrna-seq tool rna-seq written 3 months ago by Jennifer Pham • 380
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111
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Where to find reference transcriptome for firefly?
scrna-seq alignment cellranger transcriptome written 3 months ago by jrleary • 130 • updated 3 months ago by genomax ♦ 87k
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2
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553
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5 follow
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Forum: Feature Selection in 10X scRNA-seq data
scrna-seq forum pca software-error written 7 months ago by ATpoint ♦ 36k
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148
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Seurat code availability for published papers
scrna-seq seurat written 3 months ago by rbronste • 360
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216
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problem getting Seurat package
scrna-seq seurat written 3 months ago by jabbari.parnian • 0
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200
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I install the "devtools" package, but when I call it there is no such package
scrna-seq sincera rna-seq written 3 months ago by jabbari.parnian • 0
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