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<prev • 199 results • page 1 of 7 • next >
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scRNA-seq, MONOCLE3, and trajectory reconstruction, and Moran I statistics
scrna-seq written 3 months ago by Bogdan • 1.1k • updated 8 days ago by volkanergin • 0
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Why did I get very poor scRNAseq files through STARSolo, Galaxy.
scrna-seq R galaxy seurat starsolo written 13 days ago by Youyy • 0
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15 follow
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Forum: Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
scrna-seq forum pca software-error written 12 months ago by ATpoint ♦ 44k
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Tutorial: Guidelines for the computational analysis of single-cell RNA sequencing data
scrna-seq tutorial written 23 days ago by Mensur Dlakic • 8.4k • updated 23 days ago by ATpoint ♦ 44k
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How to use DEGs file for GSEA?
scrna-seq gsea rna-seq seurat written 25 days ago by biostarukha • 10 • updated 25 days ago by rpolicastro ♦ 3.3k
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9 follow
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Slingshot: how do you choose which type of dimensionality reduction to use it with?
scrna-seq slingshot rna-seq pseudotime written 18 months ago by Friederike ♦ 6.7k • updated 26 days ago by ATpoint ♦ 44k
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Analyzing mRNA turnover with scRNA seq data using R, join to metadata
scrna-seq R rna-seq written 5 weeks ago by keren.danan • 0
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Negbinom vs. logistic regression for Seurat FindMarkers()
scrna-seq rna-seq seurat written 6 weeks ago by Lucy • 60
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Can I still detect ambient RNA if I do not have filtered gene-barcode matrix?
ambient rna scrna-seq single-cell soupx written 5 weeks ago by SupBioInformatics • 30 • updated 5 weeks ago by Friederike ♦ 6.7k
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interactive browser for single-cell RNA-seq data
scrna-seq written 6 weeks ago by igor ♦ 12k
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276
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Differential expression analysis in Seurat
scrna-seq rna-seq seurat written 7 weeks ago by Lucy • 60 • updated 7 weeks ago by rpolicastro ♦ 3.3k
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merging single cell RNA-seq data
scrna-seq R rna-seq written 7 weeks ago by hiam • 10 • updated 7 weeks ago by rpolicastro ♦ 3.3k
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What is the difference between a heatmap-dendrogram of a gene-gene correlation matrix made from one cluster versus multiple clusters?
scrna-seq R seurat rna-seq written 7 weeks ago by Pratik Mehta • 80
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Is there a way to use multiple processors (parallelize) to create a heatmap for a large dataset?
scrna-seq parallel processing heatmap written 7 weeks ago by Pratik Mehta • 80
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How do I subset a Seurat object using variable features?
scrna-seq R seurat rna-seq written 7 weeks ago by Pratik Mehta • 80 • updated 7 weeks ago by bioinformatics2020 • 570
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Co expression scRNA-seq
scrna-seq co-expression written 8 weeks ago by tigeradab • 50
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Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
scrna-seq batch correction rna-seq written 9 weeks ago by hkarakurt • 100
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How do you add up the results from two barcodes in an anndata object?
scrna-seq anndata written 9 weeks ago by pomodoro_sinensis • 0
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Reading count martix in scanpy
scrna-seq python scanpy seurat written 9 weeks ago by biostarukha • 10
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Merging previously merged object in Seurat
scrna-seq single-cell seurat rna-seq R written 9 weeks ago by biostarukha • 10
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Sieving TFs from gene list
scrna-seq ncbi rna-seq genbank written 10 weeks ago by LacquerHed • 0
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6 follow
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Why it is not use UMIs for RNA-seq?
scrna-seq umis rna-seq written 11 weeks ago by rafaelsolersanblas • 20 • updated 11 weeks ago by jperezboza • 20
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Why does this 10x scRNA-seq data set have one read instead of two reads?
10x scrna-seq reads sra written 12 weeks ago by pomodoro_sinensis • 0 • updated 12 weeks ago by GenoMax ♦ 95k
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Any alternatives to Cellranger aligner that Seurat can read?
scrna-seq rna-seq cellranger sequencing written 3 months ago by louis-gil • 0 • updated 3 months ago by ATpoint ♦ 44k
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In Seurat, how do you decide the cutoff for nFeature_RNA?
scrna-seq R seurat written 3 months ago by jvbeltran0122 • 10
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Multi-group DE scRNA-seq comps without replicates
scrna-seq deseq2 seurat rna-seq written 3 months ago by LacquerHed • 0 • updated 3 months ago by khorms • 210
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cellranger: min gene count and UMI/cell filter?
scrna-seq qc cellranger 10x genomics written 3 months ago by mcsimenc • 10 • updated 3 months ago by swbarnes2 ♦ 9.4k
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Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed when "Extremely high contamination estimated"?
scrna-seq soupx rna-seq written 3 months ago by AA • 0
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Computational Biology Programming Course/Book
scrna-seq course code programming written 3 months ago by rafaelsolersanblas • 20 • updated 3 months ago by jared.andrews07 ♦ 8.4k
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Package for RNA-Protein Interaction Network
scrna-seq single-cell tutorial rna-seq written 3 months ago by jvbeltran0122 • 10
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