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rare SNP or SNV
snv snp written 9 weeks ago by prasundutta87380
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Strand Specificity of Mutations
snv written 3 months ago by German.M.Demidov1.8k
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FreeBayes and mosaic variants
somatic snv written 5 months ago by German.M.Demidov1.8k
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Reference Allele Bias
snv written 11 months ago by German.M.Demidov1.8k
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Somatic variant calling on FFPE samples
ffpe lofreq somatic variants snv somvarius written 16 months ago by dodani0 • updated 15 months ago by Biostar ♦♦ 20
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Mutect2 (GATK4, Java8) outputs empty VCF file for tumor only mode
snv rna-seq mutect2 written 15 months ago by ResearchR80 • updated 15 months ago by RamRS30k
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VARIANT effect retrieving
indel variant effect snv written 19 months ago by cocchi.e89110 • updated 17 months ago by Biostar ♦♦ 20
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finding out SNPs from SNVs and breed specific SNPs
snv snp written 18 months ago by prasundutta87380 • updated 17 months ago by Biostar ♦♦ 20
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Can't find position in GnomAD VCF
vcf snv gnomad written 18 months ago by bzg40 • updated 17 months ago by zx87549.7k
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Running time in different callers
varscan snv mutect wgs written 18 months ago by A3.9k
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New Variants Effect Prediction Tools
indel variant effect snv written 19 months ago by cocchi.e89110 • updated 19 months ago by Emily_Ensembl21k
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TCGA Broad Institute curated variants
broad institute tcga snv rna-seq written 4.5 years ago by umn_bist380 • updated 19 months ago by Biostar ♦♦ 20
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What happens when SNV caller looks at a SV (e.g. deletion) region?
snv deletion written 20 months ago by DVA550 • updated 20 months ago by WouterDeCoster44k
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Using SSrGE for SNV calling
ssrge snv written 21 months ago by landscape95170
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Annotation format for SNVs
snv snp written 24 months ago by Hamid10
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Hard time trying to calculate Allele Frequency and DP from Platypus
snv rna-seq written 2.8 years ago by simplitia40 • updated 2.1 years ago by Kevin Blighe66k
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