Showing: snvreset
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Reference Allele Bias
snv written 6 days ago by kuckunniwid580
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Somatic variant calling on FFPE samples
ffpe lofreq somatic variants snv somvarius written 5 months ago by dodani0 • updated 3 months ago by Biostar ♦♦ 20
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Mutect2 (GATK4, Java8) outputs empty VCF file for tumor only mode
snv rna-seq mutect2 written 4 months ago by ResearchR70 • updated 4 months ago by RamRS24k
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VARIANT effect retrieving
indel variant effect snv written 8 months ago by cocchi.e8930 • updated 5 months ago by Biostar ♦♦ 20
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finding out SNPs from SNVs and breed specific SNPs
snv snp written 7 months ago by prasundutta87360 • updated 6 months ago by Biostar ♦♦ 20
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Can't find position in GnomAD VCF
vcf snv gnomad written 6 months ago by bzg40 • updated 6 months ago by zx87548.4k
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Running time in different callers
varscan snv mutect wgs written 6 months ago by A3.6k
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New Variants Effect Prediction Tools
indel variant effect snv written 7 months ago by cocchi.e8930 • updated 7 months ago by Emily_Ensembl19k
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TCGA Broad Institute curated variants
broad institute tcga snv rna-seq written 3.6 years ago by umn_bist330 • updated 8 months ago by Biostar ♦♦ 20
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What happens when SNV caller looks at a SV (e.g. deletion) region?
snv deletion written 8 months ago by DVA530 • updated 8 months ago by WouterDeCoster42k
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Using SSrGE for SNV calling
ssrge snv written 9 months ago by landscape95160
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Annotation format for SNVs
snv snp written 12 months ago by Hamid10
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Hard time trying to calculate Allele Frequency and DP from Platypus
snv rna-seq written 23 months ago by simplitia30 • updated 14 months ago by Kevin Blighe51k
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using the docker container of cgpPINDEL
indel wgs snv pindel written 17 months ago by Bogdan880 • updated 16 months ago by Biostar ♦♦ 20
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a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
indel sv snv cnv written 20 months ago by Bogdan880 • updated 20 months ago by Eric T.2.5k
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Tool to identify recurrent mutations directly from VCF
vcf recurrent mutation mutation snv written 2.2 years ago by ATpoint26k • updated 22 months ago by Biostar ♦♦ 20
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