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Reference Allele Bias
snv written 4 months ago by German.M.Demidov1.5k
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Somatic variant calling on FFPE samples
ffpe lofreq somatic variants snv somvarius written 9 months ago by dodani0 • updated 8 months ago by Biostar ♦♦ 20
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Mutect2 (GATK4, Java8) outputs empty VCF file for tumor only mode
snv rna-seq mutect2 written 8 months ago by ResearchR70 • updated 8 months ago by RamRS26k
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VARIANT effect retrieving
indel variant effect snv written 12 months ago by cocchi.e8950 • updated 10 months ago by Biostar ♦♦ 20
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finding out SNPs from SNVs and breed specific SNPs
snv snp written 11 months ago by prasundutta87360 • updated 10 months ago by Biostar ♦♦ 20
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Can't find position in GnomAD VCF
vcf snv gnomad written 11 months ago by bzg40 • updated 11 months ago by zx87549.1k
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Running time in different callers
varscan snv mutect wgs written 11 months ago by A3.7k
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New Variants Effect Prediction Tools
indel variant effect snv written 12 months ago by cocchi.e8950 • updated 12 months ago by Emily_Ensembl20k
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TCGA Broad Institute curated variants
broad institute tcga snv rna-seq written 4.0 years ago by umn_bist370 • updated 12 months ago by Biostar ♦♦ 20
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What happens when SNV caller looks at a SV (e.g. deletion) region?
snv deletion written 13 months ago by DVA530 • updated 13 months ago by WouterDeCoster43k
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Using SSrGE for SNV calling
ssrge snv written 14 months ago by landscape95160
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Annotation format for SNVs
snv snp written 17 months ago by Hamid10
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Hard time trying to calculate Allele Frequency and DP from Platypus
snv rna-seq written 2.3 years ago by simplitia30 • updated 19 months ago by Kevin Blighe56k
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using the docker container of cgpPINDEL
indel wgs snv pindel written 22 months ago by Bogdan980 • updated 20 months ago by Biostar ♦♦ 20
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a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
indel sv snv cnv written 2.1 years ago by Bogdan980 • updated 2.0 years ago by Eric T.2.6k
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